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annotate m-toolbox/classes/@ao/lxspec.m @ 6:2b57573b11c7 database-connection-manager

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Add utils.mysql.execute
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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1 % LXSPEC performs log-scale cross-spectral analysis of various forms.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % DESCRIPTION: LXSPEC performs log-scale cross-spectral analysis of various forms.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 % The function is a helper function for various higher level
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 % functions. It is meant to be called from other functions
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 % (e.g., ltfe).
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % CALL: b = lxspec(a, pl, method, iALGO, iVER, invars);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % INPUTS: a - vector of input AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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12 % pl - input parameter list
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 % method - one of
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14 % 'cpsd' - compute cross-spectral density
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 % 'tfe' - estimate transfer function between inputs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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16 % 'mscohere' - estimate magnitude-squared cross-coherence
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 % 'cohere' - estimate complex cross-coherence
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Daniele Nicolodi <nicolodi@science.unitn.it>
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18 % mi - minfo object for calling method
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 % invars - invars variable from the calling higher level script
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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21 % OUTPUTS: b - output AO
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 % VERSION: $Id: lxspec.m,v 1.44 2011/04/05 08:12:40 mauro Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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24 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25 % HISTORY: 16-05-2008 M Hewitson
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26 % Creation
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 function varargout = lxspec(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33 import utils.const.*
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Daniele Nicolodi <nicolodi@science.unitn.it>
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34
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 % unpack inputs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36 as = varargin{1};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37 pl = varargin{2};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 method = varargin{3};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39 mi = varargin{4};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40 invars = varargin{5};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42 VERSION = '$Id: lxspec.m,v 1.44 2011/04/05 08:12:40 mauro Exp $';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43 % Set the method version string in the minfo object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 mi.setMversion([VERSION '-->' mi.mversion]);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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45
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46 %----------------- Select all AOs with time-series data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47 tsao = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 for ll=1:numel(as)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49 if isa(as(ll).data, 'tsdata')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 tsao = [tsao as(ll)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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51 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 warning('### xspec requires tsdata (time-series) inputs. Skipping AO %s. \nREMARK: The output doesn''t contain this AO', invars{ll});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 % Check if there are some AOs left
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56 if numel(tsao) ~= 2
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 error('### LXSPEC needs two time-series AOs.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 %----------------- Gather the input history objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 inhists = [tsao(:).hist];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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62
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63 %----------------- Check the time range.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64 time_range = mfind(pl, 'split', 'times');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 for ll=1:numel(tsao)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 if ~isempty(time_range)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67 switch class(time_range)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 case 'double'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 tsao(ll) = split(tsao(ll), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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70 'times', time_range));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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71 case 'timespan'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 tsao(ll) = split(tsao(ll), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 'timespan', time_range));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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74 case 'time'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 tsao(ll) = split(tsao(ll), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 'start_time', time_range(1), ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77 'end_time', time_range(2)));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78 case 'cell'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 tsao(ll) = split(tsao(ll), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80 'start_time', time_range{1}, ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81 'end_time', time_range{2}));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 otherwise
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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85 if tsao(ll).len <= 0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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86 error('### The object is empty! Please revise your settings ...');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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87 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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89
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90 copies = zeros(size(tsao));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92 %----------------- Resample all AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 fsmax = ao.findFsMax(tsao);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 fspl = plist(param('fsout', fsmax));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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95 for ll = 1:numel(tsao)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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96 % Check Fs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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97 if tsao(ll).data.fs ~= fsmax
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Daniele Nicolodi <nicolodi@science.unitn.it>
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98 utils.helper.msg(msg.PROC2, 'resampling AO %s to %f Hz', tsao(ll).name, fsmax);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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99 % Make a deep copy so we don't
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Daniele Nicolodi <nicolodi@science.unitn.it>
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100 % affect the original input data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101 tsao(ll) = copy(tsao(ll), 1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 copies(ll) = 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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103 tsao(ll).resample(fspl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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105 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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106
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107 %----------------- Truncate all vectors
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108 % Get shortest vector
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 lmin = ao.findShortestVector(tsao);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110 nsecs = lmin / fsmax;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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111 for ll = 1:numel(tsao)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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112 if len(tsao(ll)) ~= lmin
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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113 utils.helper.msg(msg.PROC1, 'truncating AO %s to %d secs', tsao(ll).name, nsecs);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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114 % do we already have a copy?
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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115 if ~copies(ll)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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116 % Make a deep copy so we don't
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Daniele Nicolodi <nicolodi@science.unitn.it>
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117 % affect the original input data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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118 tsao(ll) = copy(tsao(ll), 1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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119 copies(ll) = 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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120 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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121 tsao(ll).select(1:lmin);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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122 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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123 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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124
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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125 %----------------- Build signal Matrix
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Daniele Nicolodi <nicolodi@science.unitn.it>
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126 N = len(tsao(1)); % length of first signal
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Daniele Nicolodi <nicolodi@science.unitn.it>
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127 iS = zeros(numel(tsao), N);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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128 for jj = 1:numel(tsao)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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129 iS(jj,:) = tsao(jj).data.getY;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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130 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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131
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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132 %----------------- check input parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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133 pl = utils.helper.process_spectral_options(pl, 'log');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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134
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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135 % Desired number of averages
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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136 Kdes = find(pl, 'Kdes');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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137 % num desired spectral frequencies
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Daniele Nicolodi <nicolodi@science.unitn.it>
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138 Jdes = find(pl, 'Jdes');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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139 % Minimum segment length
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Daniele Nicolodi <nicolodi@science.unitn.it>
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140 Lmin = find(pl, 'Lmin');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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141 % Window function
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Daniele Nicolodi <nicolodi@science.unitn.it>
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142 Win = find(pl, 'Win');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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143 % Overlap
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Daniele Nicolodi <nicolodi@science.unitn.it>
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144 Nolap = find(pl, 'Olap')/100;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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145 % Order of detrending
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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146 Order = find(pl, 'Order');
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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147
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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148 %----------------- Get frequency vector
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Daniele Nicolodi <nicolodi@science.unitn.it>
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149 [f, r, m, L, K] = ao.ltf_plan(lmin, fsmax, Nolap, 1, Lmin, Jdes, Kdes);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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150
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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151 %----------------- compute TF Estimates
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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152 [Txy dev]= ao.mltfe(iS, f, r, m, L,K,fsmax, Win, Order, Nolap*100, Lmin, method);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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153
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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154 % Keep the data shape of the first AO
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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155 if size(tsao(1).data.y, 1) == 1
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Daniele Nicolodi <nicolodi@science.unitn.it>
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156 f = f.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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157 Txy = Txy.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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158 dev = dev.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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159 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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160
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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161 %----------------- Build output Matrix of AOs
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162
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163 % create new output fsdata
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Daniele Nicolodi <nicolodi@science.unitn.it>
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164 fsd = fsdata(f, Txy, fsmax);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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165 fsd.setXunits('Hz');
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166 switch lower(method)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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167 case 'tfe'
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168 fsd.setYunits(tsao(2).data.yunits / tsao(1).data.yunits);
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169 case 'cpsd'
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170 fsd.setYunits(tsao(2).data.yunits * tsao(1).data.yunits / unit('Hz'));
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171 case {'cohere','mscohere'}
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172 fsd.setYunits(unit());
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173 otherwise
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174 error(['### Unknown method:' method]);
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175 end
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176
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Daniele Nicolodi <nicolodi@science.unitn.it>
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177 % set object t0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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178 if eq(tsao(1).t0, tsao(2).t0)
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179 fsd.setT0(tsao(1).t0);
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180 end
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181
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182 % make output analysis object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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183 bs = ao(fsd);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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184 % add standard deviation to dy field
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Daniele Nicolodi <nicolodi@science.unitn.it>
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185 bs.data.dy = dev;
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186 % simplify the units
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Daniele Nicolodi <nicolodi@science.unitn.it>
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187 if strcmp(method, 'cpsd')
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188 bs.simplifyYunits(...
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189 plist('prefixes',false,'exceptions','Hz'),...
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190 'internal');
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191 end
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192
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Daniele Nicolodi <nicolodi@science.unitn.it>
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193 % set name
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194 bs.name = sprintf('L%s(%s->%s)', upper(method), invars{1}, invars{2});
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195 % set procinfo
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196 bs.procinfo = combine(bs.procinfo,plist('r', r, 'm', m, 'l', L, 'k', K));
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197 % Propagate 'plotinfo'
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198 if ~isempty(tsao(1).plotinfo) || ~isempty(tsao(2).plotinfo)
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199 bs.plotinfo = combine(tsao(1).plotinfo, tsao(2).plotinfo);
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200 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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201 % Add history
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Daniele Nicolodi <nicolodi@science.unitn.it>
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202 bs.addHistory(mi, pl, [invars(:)], inhists);
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203
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204
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205 % Set output
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Daniele Nicolodi <nicolodi@science.unitn.it>
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206 varargout{1} = bs;
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207 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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208 % END