annotate m-toolbox/classes/@smodel/subs.m @ 33:5e7477b94d94 database-connection-manager

Add known repositories list to LTPDAPreferences
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 % SUBS substitutes symbolic parameters with the given values.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % DESCRIPTION: SUBS substitutes symbolic parameters with the given values.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 % CALL: mdl = mdl.subs(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 % mdl = mdl.subs('all') % Substitutes all parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 % mdl = mdl.subs('a', 'b') % Substitutes the parameters 'a' and
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % 'b' with their default values
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 % mdl = mdl.subs({'a', 'b'}) % Substitutes the parameters 'a' and
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % 'b' with their default values
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Daniele Nicolodi <nicolodi@science.unitn.it>
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12 % mdl = mdl.subs('a', 33) % Substitutes the parameters 'a'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 % with 33
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14 % mdl = mdl.subs({'a'}, {33}) % Substitutes the parameters 'a'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 % with 33
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Daniele Nicolodi <nicolodi@science.unitn.it>
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16 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 % Examples
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Daniele Nicolodi <nicolodi@science.unitn.it>
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18 % --------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 % 1) m = subs(m, plist('Params', 'all')) % substitute all default values
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Daniele Nicolodi <nicolodi@science.unitn.it>
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21 % 2) m = subs(m, plist('Params', {'a', 'b'}, 'Values',{1, 1:10})) % substitute
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 % values
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 % 3) m = subs(m, plist('Params', {'a', 'b'})) % substitute default values
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Daniele Nicolodi <nicolodi@science.unitn.it>
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24 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25 % <a href="matlab:utils.helper.displayMethodInfo('smodel', 'subs')">Parameters Description</a>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27 % VERSION: $Id: subs.m,v 1.11 2011/04/08 08:56:28 hewitson Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 function varargout = subs(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33 %%% Check if this is a call for parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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34 if utils.helper.isinfocall(varargin{:})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 varargout{1} = getInfo(varargin{3});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36 return
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39 % Collect input variable names
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40 in_names = cell(size(varargin));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41 for ii = 1:nargin,in_names{ii} = inputname(ii);end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43 % Collect all AOs and plists
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 [mdls, mdl_invars, rest] = utils.helper.collect_objects(varargin(:), 'smodel', in_names);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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45 [pls, pl_invars, rest] = utils.helper.collect_objects(rest, 'plist', in_names);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47 % combine plists
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 pl = combine(pls, getDefaultPlist());
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 % Check if the user uses a plist or not
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Daniele Nicolodi <nicolodi@science.unitn.it>
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51 if isempty(pls) && ~isempty(rest)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 % The user doesn't use a input plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 iparams = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 ivals = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 iexceptions = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56 % Collect each character or cellstr in 'rest' as a parameter
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 % Collect each integer of numeric cell
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 for ii=1:numel(rest)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59 if ischar(rest{ii}) && strcmp(rest{ii}, 'all') && ii == 1
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 iparams = 'all';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 break;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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62 elseif ischar(rest{ii})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63 iparams = [iparams rest{ii}];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64 elseif iscellstr(rest{ii})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 iparams = [iparams rest{ii}];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 elseif isnumeric(rest{ii})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67 ivals = [ivals rest{ii}];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 elseif iscell(rest{ii})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 c = rest{ii};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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70 for kk=1:numel(c)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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71 if isnumeric(c{kk}), ivals = [ivals c{kk}]; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 end
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74 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 pl.pset('params', iparams);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 pl.pset('values', ivals);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 % The user uses a input plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80 iparams = find(pl, 'params');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81 ivals = find(pl, 'values');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 iexceptions = find(pl, 'exceptions');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84
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Daniele Nicolodi <nicolodi@science.unitn.it>
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85 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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86
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Daniele Nicolodi <nicolodi@science.unitn.it>
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87 % Loop over input models
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 bs = copy(mdls, nargout);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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89 for j=1:numel(mdls)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 mdl = bs(j);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 if ischar(iparams)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 if strcmpi(iparams, 'all')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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95 iparams = mdl.params;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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96 ivals = mdl.values;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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97 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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98 iparams = {iparams};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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99 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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100 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 if isempty(ivals)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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103 ivals = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104 % get values from the model
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Daniele Nicolodi <nicolodi@science.unitn.it>
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105 for ll=1:numel(iparams)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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106 idx = find(strcmp(iparams{ll}, mdl.params));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107 ivals = [ivals mdl.values(idx)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110
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Daniele Nicolodi <nicolodi@science.unitn.it>
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111 % remove the exceptions from the params list
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Daniele Nicolodi <nicolodi@science.unitn.it>
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112 if ~isempty(iexceptions)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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113 idx = ismember(iparams, iexceptions);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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114 iparams = iparams(~idx);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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115 ivals = ivals(~idx);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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116 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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117
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Daniele Nicolodi <nicolodi@science.unitn.it>
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118 if isempty(ivals) && ~strcmpi(iparams, 'all')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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119 error('### Please specify one value per parameter to substitute.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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120 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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121 if ~ischar(iparams) && numel(iparams) ~= numel(ivals)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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122 error('### Please specify one value per parameter to substitute.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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123 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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124
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Daniele Nicolodi <nicolodi@science.unitn.it>
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125 if ~iscell(ivals)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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126 ivals = {ivals};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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127 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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128
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Daniele Nicolodi <nicolodi@science.unitn.it>
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129 if numel(iparams) ~= numel(ivals)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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130 error('### The number of parameters and values doesn''t match for model %s', mdl.name);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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131 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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132
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Daniele Nicolodi <nicolodi@science.unitn.it>
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133 % Get remaining parameters and values for the output model
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Daniele Nicolodi <nicolodi@science.unitn.it>
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134 oparams = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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135 ovals = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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136 for kk=1:numel(mdl.params)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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137 if ~utils.helper.ismember(mdl.params{kk}, iparams)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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138 oparams = [oparams mdl.params(kk)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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139 if ~isempty(mdl.values)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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140 ovals = [ovals mdl.values(kk)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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141 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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142 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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143 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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144
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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145 if ~isempty(iparams) && ~isnumeric(mdl.expr)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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146 mdl.expr = subs(mdl.expr, iparams, ivals);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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147 mdl.values = ovals;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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148 mdl.params = oparams;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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149 % add history
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Daniele Nicolodi <nicolodi@science.unitn.it>
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150 mdl.addHistory(getInfo('None'), pl, mdl_invars(j), mdls(j).hist);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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151 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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152
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Daniele Nicolodi <nicolodi@science.unitn.it>
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153 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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154
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Daniele Nicolodi <nicolodi@science.unitn.it>
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155 % Set outputs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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156 varargout{1} = bs;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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157 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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158
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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159 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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160 % Local Functions %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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161 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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162
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Daniele Nicolodi <nicolodi@science.unitn.it>
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163 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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164 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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165 % FUNCTION: getInfo
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Daniele Nicolodi <nicolodi@science.unitn.it>
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166 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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167 % DESCRIPTION: Get Info Object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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168 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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169 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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170
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Daniele Nicolodi <nicolodi@science.unitn.it>
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171 function ii = getInfo(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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172 if nargin == 1 && strcmpi(varargin{1}, 'None')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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173 sets = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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174 pl = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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175 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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176 sets = {'Default'};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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177 pl = getDefaultPlist;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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178 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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179 % Build info object
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180 ii = minfo(mfilename, 'smodel', 'ltpda', utils.const.categories.helper, '$Id: subs.m,v 1.11 2011/04/08 08:56:28 hewitson Exp $', sets, pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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181 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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182
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Daniele Nicolodi <nicolodi@science.unitn.it>
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183 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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184 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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185 % FUNCTION: getDefaultPlist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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186 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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187 % DESCRIPTION: Get Default Plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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188 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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189 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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190
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Daniele Nicolodi <nicolodi@science.unitn.it>
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191 function plout = getDefaultPlist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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192 persistent pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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193 if exist('pl', 'var')==0 || isempty(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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194 pl = buildplist();
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Daniele Nicolodi <nicolodi@science.unitn.it>
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195 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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196 plout = pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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197 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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198
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Daniele Nicolodi <nicolodi@science.unitn.it>
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199 function pl = buildplist()
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200
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Daniele Nicolodi <nicolodi@science.unitn.it>
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201 pl = plist();
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202
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Daniele Nicolodi <nicolodi@science.unitn.it>
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203 % Params
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Daniele Nicolodi <nicolodi@science.unitn.it>
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204 p = param({'Params', 'The parameters to substitute for.<br>Specify ''all'' to substitute all.'}, {1, {'all'}, paramValue.OPTIONAL});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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205 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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206
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Daniele Nicolodi <nicolodi@science.unitn.it>
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207 % Values
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Daniele Nicolodi <nicolodi@science.unitn.it>
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208 p = param({'values', 'A cell-array of values to set that overide the defaults.'}, {1, {{}}, paramValue.OPTIONAL});
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209 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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210
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Daniele Nicolodi <nicolodi@science.unitn.it>
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211 % Exceptions
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Daniele Nicolodi <nicolodi@science.unitn.it>
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212 p = param({'exceptions', 'A cell-array of parameters which will not be substitute.'}, paramValue.EMPTY_CELL);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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213 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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214
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Daniele Nicolodi <nicolodi@science.unitn.it>
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215 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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216
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Daniele Nicolodi <nicolodi@science.unitn.it>
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217 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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218 % PARAMETERS: 'Params' - A cell array of the parameter names to
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Daniele Nicolodi <nicolodi@science.unitn.it>
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219 % substitute. If you specify 'all' for this
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Daniele Nicolodi <nicolodi@science.unitn.it>
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220 % parameter, then the current values of mdl.params
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Daniele Nicolodi <nicolodi@science.unitn.it>
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221 % will be substituted.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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222 % 'Values' - The values to substitute.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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223 %