annotate m-toolbox/classes/@ao/firwhiten.m @ 16:91f21a0aab35 database-connection-manager

Update utils.jquery * * * Update utils.jmysql.getsinfo
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 % FIRWHITEN whitens the input time-series by building an FIR whitening filter.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % DESCRIPTION: FIRWHITEN whitens the input time-series by building an FIR
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 % whitening filter. The algorithm ultimately uses fir2() to
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 % build the whitening filter.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 % ALGORITHM:
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % 1) Make ASD of time-series
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 % 2) Perform running median to get noise-floor estimate (ao/smoother)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % 3) Invert noise-floor estimate
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Daniele Nicolodi <nicolodi@science.unitn.it>
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12 % 4) Call mfir() on noise-floor estimate to produce whitening filter
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 % 5) Filter data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 % CALL: b = firwhiten(a, pl) % returns whitened time-series AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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16 % [b, filts] = firwhiten(a, pl) % returns the mfir filters used
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 % [b, filts, nfs] = firwhiten(a, pl) % returns the noise-floor
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Daniele Nicolodi <nicolodi@science.unitn.it>
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18 % % estimates as fsdata AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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21 % <a href="matlab:utils.helper.displayMethodInfo('ao', 'firwhiten')">Parameters Description</a>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 % VERSION: $Id: firwhiten.m,v 1.29 2011/11/11 15:21:19 luigi Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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24 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27 function varargout = firwhiten(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 callerIsMethod = utils.helper.callerIsMethod;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 % Check if this is a call for parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32 if utils.helper.isinfocall(varargin{:})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33 varargout{1} = getInfo(varargin{3});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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34 return
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37 import utils.const.*
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40 % Collect input variable names
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41 in_names = cell(size(varargin));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42 for ii = 1:nargin,in_names{ii} = inputname(ii);end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 % Collect all AOs and plists
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Daniele Nicolodi <nicolodi@science.unitn.it>
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45 [as, ao_invars] = utils.helper.collect_objects(varargin(:), 'ao', in_names);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46 pl = utils.helper.collect_objects(varargin(:), 'plist', in_names);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 % Decide on a deep copy or a modify
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49 bs = copy(as, nargout);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 inhists = copy([as.hist],1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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51
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 % combine plists
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 pl = parse(pl, getDefaultPlist());
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 % Extract necessary parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56 iNfft = find(pl, 'Nfft');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 bw = find(pl, 'bw');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 hc = find(pl, 'hc');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59 swin = find(pl, 'win');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 order = find(pl, 'order');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 fwin = find(pl, 'FIRwin');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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62 Ntaps = find(pl, 'Ntaps');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64 % Loop over input AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 filts = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 nfs = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 for j=1:numel(bs)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 if ~isa(bs(j).data, 'tsdata')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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70 warning('!!! %s expects ao/tsdata objects. Skipping AO %s', mfilename, ao_invars{j});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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71 bs(j) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 % get Nfft
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Daniele Nicolodi <nicolodi@science.unitn.it>
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74 if iNfft < 0 || isempty(iNfft)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 Nfft = length(bs(j).data.y);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77 Nfft = iNfft;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 utils.helper.msg(msg.PROC1, 'building spectrum');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80 % Make spectrum
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81 axx = psd(bs(j), plist('Nfft', Nfft, 'Win', swin, 'Order', order, 'Scale', 'ASD'));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 % make noise floor estimate
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83 utils.helper.msg(msg.PROC1, 'estimating noise-floor');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84 nxx = smoother(axx, plist('width', bw, 'hc', hc));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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85 % collect noise-floor estimates for output
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Daniele Nicolodi <nicolodi@science.unitn.it>
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86 nfs = [nfs nxx];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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87 % invert and make weights
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 w = 1./nxx;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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89 % Make mfir object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90 utils.helper.msg(msg.PROC1, 'building filter');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 ff = mfir(w, plist('Win', fwin, 'N', Ntaps));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92 % collect filters for output
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 filts = [filts ff];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 % Filter data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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95 utils.helper.msg(msg.PROC1, 'filter data');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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96 filter(bs(j), ff);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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97 % Set name
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Daniele Nicolodi <nicolodi@science.unitn.it>
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98 bs(j).name = sprintf('firwhiten(%s)', ao_invars{j});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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99 % add history
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Daniele Nicolodi <nicolodi@science.unitn.it>
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100 if ~callerIsMethod
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101 bs(j).addHistory(getInfo('None'), pl, ao_invars(j), inhists(j));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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103 % clear errors
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104 bs(j).clearErrors;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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105
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Daniele Nicolodi <nicolodi@science.unitn.it>
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106 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 % Any errors are meaningless after this process, so clear them on both
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110 % axes.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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111 bs.clearErrors(plist('axis', 'xy'));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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112
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Daniele Nicolodi <nicolodi@science.unitn.it>
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113 % Set outputs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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114 if nargout > 0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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115 varargout{1} = bs;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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116 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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117 if nargout > 1
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Daniele Nicolodi <nicolodi@science.unitn.it>
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118 varargout{2} = filts;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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119 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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120 if nargout > 2
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Daniele Nicolodi <nicolodi@science.unitn.it>
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121 varargout{3} = nfs;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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122 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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123 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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124
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Daniele Nicolodi <nicolodi@science.unitn.it>
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125 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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126 % Get Info Object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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127 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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128 function ii = getInfo(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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129 if nargin == 1 && strcmpi(varargin{1}, 'None')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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130 sets = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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131 pl = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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132 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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133 sets = {'Default'};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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134 pl = getDefaultPlist;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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135 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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136 % Build info object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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137 ii = minfo(mfilename, 'ao', 'ltpda', utils.const.categories.sigproc, '$Id: firwhiten.m,v 1.29 2011/11/11 15:21:19 luigi Exp $', sets, pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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138 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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139
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Daniele Nicolodi <nicolodi@science.unitn.it>
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140 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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141 % Get Default Plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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142 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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143 function plout = getDefaultPlist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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144 persistent pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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145 if exist('pl', 'var')==0 || isempty(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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146 pl = buildplist();
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Daniele Nicolodi <nicolodi@science.unitn.it>
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147 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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148 plout = pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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149 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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150
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Daniele Nicolodi <nicolodi@science.unitn.it>
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151 function pl = buildplist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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152
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Daniele Nicolodi <nicolodi@science.unitn.it>
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153 pl = plist();
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Daniele Nicolodi <nicolodi@science.unitn.it>
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154
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Daniele Nicolodi <nicolodi@science.unitn.it>
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155 % Nfft
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Daniele Nicolodi <nicolodi@science.unitn.it>
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156 p = param({'Nfft', ['The number of points in the FFT used to estimate<br>'...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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157 'the power spectrum. If unspecified, this is calculated as Ndata/4.']}, paramValue.DOUBLE_VALUE(-1));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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158 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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159
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Daniele Nicolodi <nicolodi@science.unitn.it>
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160 % BW
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Daniele Nicolodi <nicolodi@science.unitn.it>
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161 p = param({'bw', ['The bandwidth of the running median filter used to<br>'...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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162 'estimate the noise-floor.']}, {1, {20}, paramValue.OPTIONAL});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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163 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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164
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Daniele Nicolodi <nicolodi@science.unitn.it>
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165 % HC
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Daniele Nicolodi <nicolodi@science.unitn.it>
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166 p = param({'hc', 'The cutoff used to reject outliers (0-1).'}, {1, {0.8}, paramValue.OPTIONAL});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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167 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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168
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Daniele Nicolodi <nicolodi@science.unitn.it>
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169 % Win
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Daniele Nicolodi <nicolodi@science.unitn.it>
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170 p = param({'Win', 'Spectral window used in spectral estimation.'}, paramValue.WINDOW);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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171 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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172
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Daniele Nicolodi <nicolodi@science.unitn.it>
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173 % Order
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Daniele Nicolodi <nicolodi@science.unitn.it>
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174 p = param({'Order',['The order of segment detrending:<ul>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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175 '<li>-1 - no detrending</li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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176 '<li>0 - subtract mean</li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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177 '<li>1 - subtract linear fit</li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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178 '<li>N - subtract fit of polynomial, order N</li></ul>']}, paramValue.DETREND_ORDER);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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179 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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180
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Daniele Nicolodi <nicolodi@science.unitn.it>
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181 % FIR win
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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182 p = param({'FIRwin', 'The window to use in the filter design.'}, paramValue.WINDOW);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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183 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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184
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Daniele Nicolodi <nicolodi@science.unitn.it>
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185 % Ntaps
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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186 p = param({'Ntaps', 'The length of the FIR filter to build.'}, {1, {256}, paramValue.OPTIONAL});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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187 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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188
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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189 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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190
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Daniele Nicolodi <nicolodi@science.unitn.it>
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191 % PARAMETERS:
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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192 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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193 % 'Ntaps' - the length of the FIR filter to build [default: 256].
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Daniele Nicolodi <nicolodi@science.unitn.it>
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194 % 'FIRwin' - the window to use in the filter design. Pass a
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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195 % specwin object of the desired type and of any length.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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196 % [default: Hanning]
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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197 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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198 % parameters passed to ltpda_pwelch()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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199 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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200 % 'Nfft' - The number of points in the FFT used to estimate
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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201 % the power spectrum.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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202 % [default: Ndata/4]
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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203 % 'Win' - Spectral window used in spectral estimation.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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204 % [default: Kaiser -150dB]
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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205 % 'Order' - order of segment detrending:
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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206 % -1 - no detrending
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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207 % 0 - subtract mean [default]
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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208 % 1 - subtract linear fit
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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209 % N - subtract fit of polynomial, order N
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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210 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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211 % (Segment overlap is taken from the window function.)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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212 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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213 % parameters passed to ltpda_nfest()
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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214 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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215 % 'bw' - The bandwidth of the running median filter used to
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Daniele Nicolodi <nicolodi@science.unitn.it>
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216 % estimate the noise-floor.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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217 % [default: 20 samples]
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Daniele Nicolodi <nicolodi@science.unitn.it>
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218 % 'hc' - The cutoff used to reject outliers (0-1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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219 % [default: 0.8]
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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220