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annotate m-toolbox/classes/@ao/cohere.m @ 40:977eb37f31cb database-connection-manager

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User friendlier errors from utils.mysql.connect
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 18:04:03 +0100
parents f0afece42f48
children bc767aaa99a8
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 % COHERE estimates the coherence between time-series objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % DESCRIPTION: COHERE estimates the coherence between the
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 % time-series objects in the input analysis objects.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 % The estimate is done by taking
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 % the ratio of the CPSD between the two inputs, Sxy, divided by
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 % the product of the PSDs of the inputs, Sxx and Syy,
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % and is either magnitude-squared: (abs(Sxy))^2 / (Sxx * Syy)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 % or complex value: Sxy / sqrt(Sxx * Syy)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % Here x is the first input, y is the second input
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12 %
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13 % CALL: b = cohere(a1,a2,pl)
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14 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 % INPUTS: a1 - input analysis object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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16 % a2 - input analysis object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 % pl - input parameter list
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18 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 % OUTPUTS: b - output analysis object
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20 %
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21 % <a href="matlab:utils.helper.displayMethodInfo('ao', 'cohere')">Parameters Description</a>
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22 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 % VERSION: $Id: cohere.m,v 1.43 2011/04/08 08:56:16 hewitson Exp $
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24 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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26
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27 function varargout = cohere(varargin)
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28
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 % Check if this is a call for parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30 if utils.helper.isinfocall(varargin{:})
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31 varargout{1} = getInfo(varargin{3});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32 return
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33 end
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34
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 import utils.const.*
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36 utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);
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37
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 if nargout == 0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39 error('### cohere cannot be used as a modifier. Please give an output variable.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40 end
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41
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42 % Collect input variable names
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43 in_names = cell(size(varargin));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 for ii = 1:nargin,in_names{ii} = inputname(ii);end
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45
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46 % Collect all AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47 [as, ao_invars] = utils.helper.collect_objects(varargin(:), 'ao', in_names);
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48
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49 % Apply defaults to plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 pl = applyDefaults(getDefaultPlist, varargin{:});
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51
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 % Throw an error if input is not two AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 if numel(as) ~= 2
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 error('### cohere only accepts two inputs AOs.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 end
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56
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 % Compute coherence with xspec
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 scale_type = find(pl, 'Type');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59 switch lower(scale_type)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 case 'c'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 bs = xspec(as, pl, 'cohere', getInfo, ao_invars);
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62 case 'ms'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63 bs = xspec(as, pl, 'mscohere', getInfo, ao_invars);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64 otherwise
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 error(['### Unknown coherence type: [' scale_type ']']);
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66 end
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67
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 % Set output
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 varargout{1} = bs;
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70
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71 end
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72
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73 %--------------------------------------------------------------------------
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74 % Get Info Object
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75 %--------------------------------------------------------------------------
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76 function ii = getInfo(varargin)
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77 if nargin == 1 && strcmpi(varargin{1}, 'None')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78 sets = {};
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79 pl = [];
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80 else
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81 sets = {'Default'};
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82 pl = getDefaultPlist();
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83 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84 % Build info object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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85 ii = minfo(mfilename, 'ao', 'ltpda', utils.const.categories.sigproc, '$Id: cohere.m,v 1.43 2011/04/08 08:56:16 hewitson Exp $', sets, pl);
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86 ii.setModifier(false);
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87 ii.setArgsmin(2);
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88 end
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89
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90 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 % Get Default Plist
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92 %--------------------------------------------------------------------------
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93
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 function plout = getDefaultPlist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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95 persistent pl;
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96 if ~exist('pl', 'var') || isempty(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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97 pl = buildplist();
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98 end
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99 plout = pl;
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100 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 function pl = buildplist()
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103
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104 % General plist for Welch-based, linearly spaced spectral estimators
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Daniele Nicolodi <nicolodi@science.unitn.it>
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105 pl = plist.WELCH_PLIST;
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106
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107 % Type
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108 p = param({'Type',['type of output scaling. Choose from:<ul>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 '<li>MS - Magnitude-Squared Coherence:<br><tt>(abs(Sxy))^2 / (Sxx * Syy)</tt></li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110 '<li>C - Complex Coherence:<br><tt>Sxy / sqrt(Sxx * Syy)</tt></li></ul>']}, {1, {'C', 'MS'}, paramValue.SINGLE});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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111 pl.append(p);
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112
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113 end
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114