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author Daniele Nicolodi <nicolodi@science.unitn.it>
date Tue, 06 Dec 2011 19:07:22 +0100
parents 409a22968d5e
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1 % UTP_AO_CONFINT a set of UTPs for the ao/confint method
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2 %
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3 % M Hewitson 06-08-08
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4 %
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5 % $Id: utp_ao_confint.m,v 1.2 2011/05/22 21:35:42 mauro Exp $
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6 %
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7
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8 % <MethodDescription>
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9 %
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10 % The confint method of the ao class computes the confidence intervals for spectral estimate.
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11 %
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12 % </MethodDescription>
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13
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14 function results = utp_ao_confint(varargin)
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15
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16 % Check the inputs
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17 if nargin == 0
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18
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19 addpath(fullfile(fileparts(which(mfilename)), 'reference_files'))
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20
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21 % Some keywords
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22 class = 'ao';
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23 mthd = 'confint';
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24
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25 results = [];
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26 disp('******************************************************');
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27 disp(['**** Running UTPs for ' class '/' mthd]);
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28 disp('******************************************************');
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29
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30 % Test AOs
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31 [at1,at2,at3,at4,at5,at6,atvec,atmat] = eval(['get_test_objects_' class]);
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32
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33 % reference psd for rebuild
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34 rsp = psd(at5);
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35
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36 % Exception list for the UTPs:
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37 [ple1,ple2,ple3,ple4,ple5,ple6] = get_test_ples();
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38
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39 % reference confs
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40 rconf = [5.7 16.0];
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41
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42 % reference ao for dof test
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43 plrefdata = plist('fs', 1, 'nsecs', 1024, ...
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44 'tsfcn', 'randn(size(t))');
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45 refdata = ao(plrefdata);
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46
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47
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48
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49 % Run the tests
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50 results = [results utp_01]; % getInfo call
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51 results = [results utp_06]; % Test history is working
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52 results = [results utp_07]; % Test against reference data
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53 results = [results utp_08]; % Test the data shape
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54
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55
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56 disp('Done.');
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57 disp('******************************************************');
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58
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59 elseif nargin == 1 % Check for UTP functions
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60 if strcmp(varargin{1}, 'isutp')
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61 results = 1;
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62 else
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63 results = 0;
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64 end
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65 else
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66 error('### Incorrect inputs')
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67 end
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68
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69
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70 %% UTP_01
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71
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72 % <TestDescription>
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73 %
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74 % Tests that the getInfo call works for this method.
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75 %
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76 % </TestDescription>
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77 function result = utp_01
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78
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79
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80 % <SyntaxDescription>
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81 %
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82 % Test that the getInfo call works for no sets, all sets, and each set
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83 % individually.
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84 %
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85 % </SyntaxDescription>
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86
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87 % <SyntaxCode>
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88 try
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89 % Call for no sets
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90 io(1) = eval([class '.getInfo(''' mthd ''', ''None'')']);
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91 % Call for all sets
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92 io(2) = eval([class '.getInfo(''' mthd ''')']);
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93 % Call for each set
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94 for kk=1:numel(io(2).sets)
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95 io(kk+2) = eval([class '.getInfo(''' mthd ''', ''' io(2).sets{kk} ''')']);
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96 end
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97 stest = true;
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98 catch err
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99 disp(err.message)
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100 stest = false;
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101 end
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102 % </SyntaxCode>
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103
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104 % <AlgoDescription>
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105 %
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106 % 1) Check that getInfo call returned an minfo object in all cases.
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107 % 2) Check that all plists have the correct parameters.
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108 %
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109 % </AlgoDescription>
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110
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111 % <AlgoCode>
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112 atest = true;
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113 if stest
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114 % check we have minfo objects
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115 if isa(io, 'minfo')
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116
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117 %%% SET 'None'
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118 if ~isempty(io(1).sets), atest = false; end
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119 if ~isempty(io(1).plists), atest = false; end
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120 %%% Check all Sets
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121 if ~any(strcmpi(io(2).sets, 'Default')), atest = false; end
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122 if numel(io(2).plists) ~= numel(io(2).sets), atest = false; end
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123 %%%%%%%%%% Default PList
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124 if io(3).plists.nparams ~= 4, atest = false; end
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125 % Check key
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126 if ~io(3).plists.isparam('method'), atest = false; end
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127 if ~io(3).plists.isparam('DataLength'), atest = false; end
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128 if ~io(3).plists.isparam('Conf'), atest = false; end
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129 if ~io(3).plists.isparam('dof'), atest = false; end
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130 % Check default value
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131 if ~isequal(io(3).plists.find('method'), 'psd'), atest = false; end
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132 if ~isequal(io(3).plists.find('DataLength'), paramValue.EMPTY_DOUBLE), atest = false; end
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133 if ~isequal(io(3).plists.find('Conf'), 95), atest = false; end
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134 if ~isequal(io(3).plists.find('dof'), paramValue.EMPTY_DOUBLE), atest = false; end
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135 % Check options
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136 if ~isequal(io(3).plists.getOptionsForParam('method'), {'psd','lpsd','mscohere','mslcohere'}), atest = false; end
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137 if ~isequal(io(3).plists.getOptionsForParam('DataLength'), {paramValue.EMPTY_DOUBLE}), atest = false; end
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138 if ~isequal(io(3).plists.getOptionsForParam('Conf'), {95}), atest = false; end
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139 if ~isequal(io(3).plists.getOptionsForParam('dof'), {paramValue.EMPTY_DOUBLE}), atest = false; end
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140 end
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141 else
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142 atest = false;
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143 end
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144 % </AlgoCode>
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145
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146 % Return a result structure
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147 result = utp_prepare_result(atest, stest, dbstack, mfilename);
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148 end % END UTP_01
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149
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150 %% UTP_06
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151
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152 % <TestDescription>
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153 %
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154 % Tests that the confint method properly applies history.
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155 %
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156 % </TestDescription>
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157 function result = utp_06
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158
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159 % <SyntaxDescription>
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160 %
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parents:
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161 % Test that the result of applying the confint method can be processed back
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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162 % to an m-file.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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163 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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164 % </SyntaxDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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165
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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166 % <SyntaxCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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167 try
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
168 out = confint(rsp);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
169 mout = rebuild(out);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
170 stest = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
171 catch err
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
172 disp(err.message)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
173 stest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
174 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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175 % </SyntaxCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
176
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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177 % <AlgoDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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178 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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179 % 1) Check that the last entry in the history of 'out' corresponds to
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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180 % 'confint'.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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181 % 2) Check that the re-built object is the same object as 'out'.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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182 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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183 % </AlgoDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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184
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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185 % <AlgoCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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186 atest = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
187 if stest
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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188 % Check the last step in the history of 'out'
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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189 if ~strcmp(out.hist.methodInfo.mname, 'confint'), atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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190 % Check the re-built object
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
191 if ~eq(mout, out, ple2), atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
192 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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193 atest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
194 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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195 % </AlgoCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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196
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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197 % Return a result structure
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Daniele Nicolodi <nicolodi@science.unitn.it>
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198 result = utp_prepare_result(atest, stest, dbstack, mfilename);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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199 end % END UTP_06
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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200
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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201 %% UTP_07
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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202
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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203 % <TestDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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204 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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205 % Tests that the confint method provides correct values for spectra
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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206 % confidence intervals.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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207 % Reference on D B Percival and A T Walden, Spectral Analysis for
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Daniele Nicolodi <nicolodi@science.unitn.it>
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208 % Physical Applications, pg. 299
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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209 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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210 % </TestDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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211 function result = utp_07
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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212
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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213 % <SyntaxDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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214 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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215 % Test that the applying psd works on a single AO.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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216 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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217 % </SyntaxDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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218
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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219 % <SyntaxCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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220 try
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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221
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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222 plsp = plist('win','BH92','order',1,'navs',1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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223 axx = psd(refdata,plsp);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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224 plconf = plist('method','psd',...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
225 'DataLength',numel(refdata.y),...
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
226 'Conf',95);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
227 cf = confint(axx,plconf);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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228
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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229 llcf = 10*log10(cf.objs{1}.y);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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230 laxx = 10*log10(axx.y);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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231 lucf = 10*log10(cf.objs{2}.y);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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232
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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233 dcf = [(laxx-llcf) (lucf-laxx)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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234
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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235
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
236 stest = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
237 catch err
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
238 disp(err.message)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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239 stest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
240 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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241 % </SyntaxCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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242
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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243 % <AlgoDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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244 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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245 % 1) Check that output agrees with the reference values.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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246 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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247 % </AlgoDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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248
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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249 % <AlgoCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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250 atest = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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251 TOL = 0.01;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
252
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
253 if stest
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
254 for jj=1:size(dcf,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
255 if any((abs(dcf(jj,:) - rconf) ./ rconf) >= TOL)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
256 atest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
257 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
258 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
259 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
260 atest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
261 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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262 % </AlgoCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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263
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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264 % Return a result structure
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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265 result = utp_prepare_result(atest, stest, dbstack, mfilename);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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266 end % END UTP_07
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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267
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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268 %% UTP_08
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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269
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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270 % <TestDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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271 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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272 % Tests that the confint method keeps the data shape of the input object.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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273 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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274 % </TestDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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275 function result = utp_08
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
276
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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277 % <SyntaxDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
278 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
279 % Test that the confint method keeps the data shape of the input object. The
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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280 % input AO must be an AO with row data and an AO with column data.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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281 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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282 % </SyntaxDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
283
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
284 try
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
285 % <SyntaxCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
286 aa1 = at5.psd;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
287 aa2 = at6.psd;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
288 out1obj = confint(aa1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
289 out1_1 = out1obj.getObjectAtIndex(1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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290 out1_2 = out1obj.getObjectAtIndex(2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
291 out1_3 = out1obj.getObjectAtIndex(3);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
292 out2obj = confint(aa2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
293 out2_1 = out2obj.getObjectAtIndex(1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
294 out2_2 = out2obj.getObjectAtIndex(2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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295 out2_3 = out2obj.getObjectAtIndex(3);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
296 % </SyntaxCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
297 stest = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
298 catch err
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
299 disp(err.message)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
300 stest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
301 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
302
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
303 % <AlgoDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
304 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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305 % 1) Check that the shpe of the data doesn't change.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
306 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
307 % </AlgoDescription>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
308
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
309 atest = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
310 if stest
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
311 % <AlgoCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
312 % Check the shape of the output data
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
313 if size(out1_1.data.y,1) == 1, atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
314 if size(out1_2.data.y,1) == 1, atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
315 if size(out1_3.data.y,1) == 1, atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
316 if size(out2_1.data.y,2) == 2, atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
317 if size(out2_2.data.y,2) == 2, atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
318 if size(out2_3.data.y,2) == 2, atest = false; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
319 % </AlgoCode>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
320 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
321 atest = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
322 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
323
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
324 % Return a result structure
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
325 result = utp_prepare_result(atest, stest, dbstack, mfilename);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
326 end % END UTP_08
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
327
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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328
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409a22968d5e Add unit tests
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409a22968d5e Add unit tests
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parents:
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409a22968d5e Add unit tests
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parents:
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409a22968d5e Add unit tests
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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333 end