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Update check for repository connection parameter in constructors
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
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2 "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd">
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3
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4 <html lang="en">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 <head>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 <meta name="generator" content=
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7 "HTML Tidy for Mac OS X (vers 1st December 2004), see www.w3.org">
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8 <meta http-equiv="Content-Type" content=
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9 "text/html; charset=us-ascii">
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10
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11 <title>IFO/Temperature Example - Introduction (LTPDA Toolbox)</title>
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12 <link rel="stylesheet" href="docstyle.css" type="text/css">
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13 <meta name="generator" content="DocBook XSL Stylesheets V1.52.2">
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14 <meta name="description" content=
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15 "Presents an overview of the features, system requirements, and starting the toolbox.">
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16 </head>
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17
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18 <body>
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19 <a name="top_of_page" id="top_of_page"></a>
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20
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21 <p style="font-size:1px;">&nbsp;</p>
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22
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23 <table class="nav" summary="Navigation aid" border="0" width=
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24 "100%" cellpadding="0" cellspacing="0">
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25 <tr>
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26 <td valign="baseline"><b>LTPDA Toolbox</b></td><td><a href="../helptoc.html">contents</a></td>
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27
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28 <td valign="baseline" align="right"><a href=
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29 "ltpda_training_topic_1_7.html"><img src="b_prev.gif" border="0" align=
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30 "bottom" alt="Writing LTPDA scripts"></a>&nbsp;&nbsp;&nbsp;<a href=
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31 "ltpda_training_topic_2.html"><img src="b_next.gif" border="0" align=
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32 "bottom" alt="Topic 2 - Pre-processing of data"></a></td>
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33 </tr>
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34 </table>
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35
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36 <h1 class="title"><a name="f3-12899" id="f3-12899"></a>IFO/Temperature Example - Introduction</h1>
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37 <hr>
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38
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39 <p>
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40 <p>
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41 In your data pack, you will find two raw data series. These are real measurements
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42 of a system that looks like
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43 </p>
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44 <img src="images/ltpda_training_1/ifo_temp_model.png" alt="Model of the IFO/temperature system" width="600px" border="1">
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45 <p>
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46 We have measured the two signals, <tt>T(t)</tt> and <tt>X(t)</tt>. The displacement input to the
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47 interferometer, <tt>dx(t)</tt>, is inaccessible to us, and is in fact the data we want to
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48 recover from the data analysis.
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49 </p>
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50 <br>
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51 <br>
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52 <h2>Reading and calibrating the interferometer data</h2>
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53 <br>
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54 <p>
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55 The interferometer data, X(t), is saved in the file <tt>ifo_temp_example/ifo_training.dat</tt>. This is a
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56 two-column ASCII file with the first column giving the time-stamps of the data and the second column the
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 measured IFO output in radians.
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58 </p>
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59 <p>
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60 To read in the data, we can use the AO constuctor, with the set of parameters "From ASCII File". The key
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 parameters are:
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62 <table cellspacing="0" class="body" cellpadding="2" border="0" width="80%">
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63 <colgroup>
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64 <col width="15%"/>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 <col width="35%"/>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 <col width="50%"/>
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67 </colgroup>
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68 <thead>
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69 <tr valign="top">
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70 <th class="categorylist">Key</th>
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71 <th class="categorylist">Value</th>
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72 <th class="categorylist">Description</th>
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73 </tr>
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74 </thead>
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75 <tbody>
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76 <!-- Key 'filename' -->
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77 <tr valign="top">
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78 <td bgcolor="#f3f4f5">
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79 <p><tt>FILENAME</tt></p>
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80 </td>
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81 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 <p><span class="string">'ifo_temp_example/ifo_training.dat'</span></p>
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83 </td>
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84 <td bgcolor="#f3f4f5">
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85 <p>The name of the file to read the data from.</p>
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86 </td>
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87 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 <!-- Key 'type' -->
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89 <tr valign="top">
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90 <td bgcolor="#f3f4f5">
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91 <p><tt>TYPE</tt></p>
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92 </td>
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93 <td bgcolor="#f3f4f5">
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94 <p><span class="string">'tsdata'</span></p>
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95 </td>
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96 <td bgcolor="#f3f4f5">
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97 <p>Interpret the data in the file as time-series data.</p>
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98 </td>
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99 </tr>
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100 <!-- Key 'columns' -->
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101 <tr valign="top">
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102 <td bgcolor="#f3f4f5">
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103 <p><tt>COLUMNS</tt></p>
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104 </td>
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105 <td bgcolor="#f3f4f5">
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106 <p>[1 2]</p>
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107 </td>
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108 <td bgcolor="#f3f4f5">
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109 <p>Load the data x-y pairs from columns 1 (as x) and 2 (as y).</p>
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110 </td>
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111 </tr>
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112 <!-- Key 'xunits' -->
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113 <tr valign="top">
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114 <td bgcolor="#f3f4f5">
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115 <p><tt>XUNITS</tt></p>
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116 </td>
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117 <td bgcolor="#f3f4f5">
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118 <p><span class="string">'s'</span></p>
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119 </td>
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120 <td bgcolor="#f3f4f5">
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121 <p>Set the units of the x-data to seconds (s).</p>
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122 </td>
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123 </tr>
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124 <!-- Key 'yunits' -->
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125 <tr valign="top">
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126 <td bgcolor="#f3f4f5">
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127 <p><tt>YUNITS</tt></p>
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128 </td>
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129 <td bgcolor="#f3f4f5">
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130 <p><span class="string">'rad'</span></p>
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131 </td>
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132 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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133 <p>Set the units of the y-data to radians (rad).</p>
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134 </td>
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135 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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136 <!-- Key 'robust' -->
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137 <tr valign="top">
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138 <td bgcolor="#f3f4f5">
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139 <p><tt>ROBUST</tt></p>
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140 </td>
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141 <td bgcolor="#f3f4f5">
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142 <p><span class="string">'no'</span></p>
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143 </td>
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144 <td bgcolor="#f3f4f5">
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145 <p>Use fast data reading for this simple file format.</p>
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146 </td>
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147 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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148 <!-- Key 'description' -->
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149 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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150 <td bgcolor="#f3f4f5">
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151 <p><tt>DESCRIPTION</tt></p>
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152 </td>
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153 <td bgcolor="#f3f4f5">
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154 <p><span class="string">'Interferometer data'</span></p>
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155 </td>
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156 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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157 <p>Set some text to the 'description' field of the AO.</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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158 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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159 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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160 </tbody>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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161 </table>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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162 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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163 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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164 Once we've loaded the data we can calibrate it to displacement using the following
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Daniele Nicolodi <nicolodi@science.unitn.it>
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165 equation:
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Daniele Nicolodi <nicolodi@science.unitn.it>
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166 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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167 <img src="images/ltpda_training_1/topic1/ifo_cal_factor.png" alt="Convert rad to m" width="200px" border="1">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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168 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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169
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Daniele Nicolodi <nicolodi@science.unitn.it>
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170 where lambda=1064nm.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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171 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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172 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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173 To do the calibration, you can use the method <tt>ao/scale</tt>,
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Daniele Nicolodi <nicolodi@science.unitn.it>
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174 specifying the <tt>factor</tt> and the <tt>yunits</tt> of the factor
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Daniele Nicolodi <nicolodi@science.unitn.it>
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175 itself. Then save the resulting time-series to disk in <tt>ifo_temp_example/ifo_disp.xml</tt>.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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176 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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177 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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178 A finished pipeline might look something like:
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Daniele Nicolodi <nicolodi@science.unitn.it>
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179 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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180 <img src="images/ltpda_training_1/topic1/ifo_cal_pipeline.png" alt="IFO calibration pipeline" border="1">
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181
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Daniele Nicolodi <nicolodi@science.unitn.it>
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182
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Daniele Nicolodi <nicolodi@science.unitn.it>
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183 <br>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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184 <br>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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185 <h2>Reading and calibrating the temperature data</h2>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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186 <br>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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187 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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188 The temperature data, T(t), is saved in the file <tt>ifo_temp_example/temp_training.dat</tt>. Again, this is a
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Daniele Nicolodi <nicolodi@science.unitn.it>
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189 two-column ASCII file; the first column contains the time-stamps of the data, the second column
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Daniele Nicolodi <nicolodi@science.unitn.it>
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190 contains the temperature values in degrees Celsius.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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191 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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192 <p>
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193 To read in the data, we can use the AO constuctor, with the set of parameters "From ASCII File". The key
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Daniele Nicolodi <nicolodi@science.unitn.it>
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194 parameters are:
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Daniele Nicolodi <nicolodi@science.unitn.it>
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195 <table cellspacing="0" class="body" cellpadding="2" border="0" width="80%">
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196 <colgroup>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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197 <col width="15%"/>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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198 <col width="35%"/>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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199 <col width="50%"/>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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200 </colgroup>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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201 <thead>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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202 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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203 <th class="categorylist">Key</th>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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204 <th class="categorylist">Value</th>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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205 <th class="categorylist">Description</th>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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206 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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207 </thead>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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208 <tbody>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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209 <!-- Key 'filename' -->
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210 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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211 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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212 <p><tt>FILENAME</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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213 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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214 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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215 <p><span class="string">'ifo_temp_example/temp_training.dat'</span></p>
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216 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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217 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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218 <p>The name of the file to read the data from.</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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219 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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220 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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221 <!-- Key 'type' -->
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Daniele Nicolodi <nicolodi@science.unitn.it>
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222 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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223 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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224 <p><tt>TYPE</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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225 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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226 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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227 <p><span class="string">'tsdata'</span></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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228 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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229 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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230 <p>Interpret the data in the file as time-series data.</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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231 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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232 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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233 <!-- Key 'columns' -->
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Daniele Nicolodi <nicolodi@science.unitn.it>
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234 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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235 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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236 <p><tt>COLUMNS</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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237 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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238 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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239 <p>[1 2]</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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240 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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241 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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242 <p>Load the data x-y pairs from columns 1 (as x) and 2 (as y).</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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243 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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244 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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245 <!-- Key 'xunits' -->
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Daniele Nicolodi <nicolodi@science.unitn.it>
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246 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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247 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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248 <p><tt>XUNITS</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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249 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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250 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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251 <p><span class="string">'s'</span></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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252 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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253 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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254 <p>Set the units of the x-data to seconds (s).</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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255 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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256 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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257 <!-- Key 'yunits' -->
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Daniele Nicolodi <nicolodi@science.unitn.it>
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258 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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259 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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260 <p><tt>YUNITS</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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261 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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262 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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263 <p><span class="string">'degC'</span></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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264 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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265 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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266 <p>Set the units of the y-data to degrees Celsius.</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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267 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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268 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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269 <!-- Key 'robust' -->
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Daniele Nicolodi <nicolodi@science.unitn.it>
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270 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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271 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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272 <p><tt>ROBUST</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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273 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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274 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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275 <p><span class="string">'no'</span></p>
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276 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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277 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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278 <p>Use fast data reading for this simple file format.</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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279 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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280 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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281 <!-- Key 'description' -->
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Daniele Nicolodi <nicolodi@science.unitn.it>
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282 <tr valign="top">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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283 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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284 <p><tt>DESCRIPTION</tt></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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285 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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286 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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287 <p><span class="string">'Temperature data'</span></p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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288 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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289 <td bgcolor="#f3f4f5">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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290 <p>Set some text to the 'description' field of the AO.</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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291 </td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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292 </tr>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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293 </tbody>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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294 </table>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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295 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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296 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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297 Having loaded the temperature data, we can proceed to calibrate it to Kelvin by adding
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Daniele Nicolodi <nicolodi@science.unitn.it>
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298 273.15 to the data and then change the y-units. You can do this using the two AO methods:
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Daniele Nicolodi <nicolodi@science.unitn.it>
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299 <br>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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300 <ul>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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301 <li><tt>offset</tt> -- to add the offset</li>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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302 <li><tt>setYunits</tt> -- to change the y-units of the data</li>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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303 </ul>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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304 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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305 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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306 The final step is to save this calibrated temperature data to disk as an AO XML file called
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Daniele Nicolodi <nicolodi@science.unitn.it>
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307 <tt>ifo_temp_example/temp_kelvin.xml</tt>, ready for input to the next topic.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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308 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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309 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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310 A complete pipeline for this step might look like:
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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311 </p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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312 <img src="images/ltpda_training_1/topic1/temp_cal_pipeline.png" alt="Calibration pipeline for temperature data" border="1">
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Daniele Nicolodi <nicolodi@science.unitn.it>
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313 <p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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314 <table cellspacing="0" class="note" summary="Note" cellpadding="5" border="1">
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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315 <tr width="90%">
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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316 <td>
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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317 To plot the data with hours on the x-axis instead of seconds, use the <tt>iplot</tt> parameter <tt>XUNITS</tt>.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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318 For example:
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Daniele Nicolodi <nicolodi@science.unitn.it>
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319 <div class="fragment"><pre>
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320 iplot(a, plist(<span class="string">'XUNITS'</span>, <span class="string">'h'</span>))
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321 </pre></div>
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322 </td>
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323 </tr>
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324 </table>
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325 </p>
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326
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327 </p>
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328
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Daniele Nicolodi <nicolodi@science.unitn.it>
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329 <br>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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330 <br>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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331 <table class="nav" summary="Navigation aid" border="0" width=
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332 "100%" cellpadding="0" cellspacing="0">
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333 <tr valign="top">
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334 <td align="left" width="20"><a href="ltpda_training_topic_1_7.html"><img src=
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335 "b_prev.gif" border="0" align="bottom" alt=
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Daniele Nicolodi <nicolodi@science.unitn.it>
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336 "Writing LTPDA scripts"></a>&nbsp;</td>
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337
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338 <td align="left">Writing LTPDA scripts</td>
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339
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340 <td>&nbsp;</td>
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341
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342 <td align="right">Topic 2 - Pre-processing of data</td>
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343
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Daniele Nicolodi <nicolodi@science.unitn.it>
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344 <td align="right" width="20"><a href=
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Daniele Nicolodi <nicolodi@science.unitn.it>
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345 "ltpda_training_topic_2.html"><img src="b_next.gif" border="0" align=
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346 "bottom" alt="Topic 2 - Pre-processing of data"></a></td>
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347 </tr>
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348 </table><br>
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349
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Daniele Nicolodi <nicolodi@science.unitn.it>
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350 <p class="copy">&copy;LTP Team</p>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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351 </body>
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352 </html>