Mercurial > hg > ltpda

annotate m-toolbox/sltpda/sltpda_execute_loops.m @ 26:ce4df2e95a55 database-connection-manager

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Remove LTPDARepositoryManager initialization
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 function sltpda_execute_loops(model)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 % SLTPDA_EXECUTE_LOOPS runs all the loops in the input data-analysis pipeline.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 % If not loops are present, then the pipeline is executed once.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 % Usage: sltpda_execute_loops(model)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 % M Hewitson 12-06-07
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 %
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9 % $Id: sltpda_execute_loops.m,v 1.2 2007/06/13 08:47:28 hewitson Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 %
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11
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Daniele Nicolodi <nicolodi@science.unitn.it>
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12 % Make sure the model is open
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 open_system(model);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 if sltpda_verify_model(model)
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16
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17 global sltpda_loop_plotTitle;
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18
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 % parse model file
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 cmds = sltpda_parse_model(model);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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21 save 'cmds.mat' cmds
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 ncmds = length(cmds);
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23
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Daniele Nicolodi <nicolodi@science.unitn.it>
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24 % get loops
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25 loops = sltpda_buildloops(model)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26 save 'loops.mat' loops
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27 nloops = length(loops);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28 % how many loops switched on
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 non = 0;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30 for j=1:nloops
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 if strcmp(loops(j).on, 'on')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32 non = non + 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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34 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 % go through each loop
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36 if nloops > 0 && non > 0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 % convert the loops to a set of substitution commands
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39 subs = loops2subs(loops);
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40
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41 % Now run levels
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42 l1idx = find([subs.level] == 1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43 l2idx = find([subs.level] == 2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 l3idx = find([subs.level] == 3);
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45
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46 for l1=l1idx
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47 if isempty(l2idx)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 ll = [l1];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49 % command substitution
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 runLoop2(cmds, subs(ll))
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51 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 for l2=l2idx
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53 if isempty(l3idx)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 ll = [l1 l2];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 % command substitution
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56 runLoop2(cmds, subs(ll))
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 for l3=l3idx
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59 ll = [l1 l2 l3];
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60
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61
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62
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63
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64 % command substitution
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 runLoop2(cmds, subs(ll))
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67 end
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68 end
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69 end
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70 end
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71
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 % for l=1:nloops
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 % % - for each loop we need to adjust the parameters of the model
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Daniele Nicolodi <nicolodi@science.unitn.it>
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74 % % - look for the command to modify then set the parameter
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 % loop = loops(l);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 % if strcmp(loop.on, 'on')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77 % values = str2num(loop.values);
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78 % if isempty(values)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 % values = loop.values;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80 % end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81 % nvals = length(values);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 % for v=1:nvals
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83 % % set sltpda_loop_plotTitle
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84 % if isnumeric(values(v))
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Daniele Nicolodi <nicolodi@science.unitn.it>
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85 % sltpda_loop_plotTitle = ['loop_' loop.key '_' num2str(values(v))];
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86 % else
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87 % sltpda_loop_plotTitle = ['loop_' loop.key '_' values(v)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 % end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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89 % runLoop(cmds, str2num(loop.handle), loop.key, values(v));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90 % end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 % end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92 % end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 runLoop2(cmds, []);
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95 % runLoop(cmds, [], [], []);
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96 end
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97 end
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98
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99
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100 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101 % Run a loop around a set of commands
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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103 function runLoop2(cmds, subs)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104
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Daniele Nicolodi <nicolodi@science.unitn.it>
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105
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Daniele Nicolodi <nicolodi@science.unitn.it>
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106 global sltpda_loop_plotTitle;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108 % evaluate each command
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 % - here we can set the waitbar caption to display the current
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110 % - parameter name and value
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Daniele Nicolodi <nicolodi@science.unitn.it>
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111 disp('-----------------------------------------------------------')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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112 sltpda_loop_plotTitle = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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113 h = waitbar(0,'Executing pipeline...');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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114 nc = length(cmds);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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115 for j=1:nc
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Daniele Nicolodi <nicolodi@science.unitn.it>
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116 cmd = cmds(j);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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117 if isempty(subs)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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118 sidx = [];
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119 else
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120 sidx = find(cmd.handle == [subs.handle]);
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121 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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122 for k=1:length(sidx)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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123 % cmd
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Daniele Nicolodi <nicolodi@science.unitn.it>
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124 key = subs(sidx(k)).key;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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125 val = subs(sidx(k)).value;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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126 if isnumeric(val)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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127 valstr = mat2str(val);
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128 else
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129 valstr = char(val);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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130 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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131 sltpda_loop_plotTitle = [sltpda_loop_plotTitle ' / ' key ':' valstr];
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132 if iscell(val)
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133 val = char(val);
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134 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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135 disp('^^^ performing parameter substitution.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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136 pl = cmd.plist;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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137 pl = set(pl, key, val);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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138 params = string(pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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139 newcmd = sltpda_buildCmd(cmd.ins, cmd.outs, params, cmd.fcn);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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140 cmd.cmd = newcmd;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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141 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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142 disp(['== executing: ' cmd.cmd]);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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143 eval(cmd.cmd);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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144 waitbar(j/nc,h)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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145 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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146 delete(h);
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147
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148 disp('-----------------------------------------------------------')
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149
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150 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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151 % convert loops to substitutions
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Daniele Nicolodi <nicolodi@science.unitn.it>
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152 function subs = loops2subs(loops)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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153
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Daniele Nicolodi <nicolodi@science.unitn.it>
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154 % make empty substitutions; one for each allowed level
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Daniele Nicolodi <nicolodi@science.unitn.it>
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155 subs = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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156 % subs(1).handle = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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157 % subs(1).level = 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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158 % subs(1).key = '';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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159 % subs(1).value = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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160 % subs(2).handle = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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161 % subs(2).level = 2;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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162 % subs(2).key = '';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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163 % subs(2).value = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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164 % subs(3).handle = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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165 % subs(3).level = 3;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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166 % subs(3).key = '';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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167 % subs(3).value = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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168
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169
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Daniele Nicolodi <nicolodi@science.unitn.it>
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170 k = length(subs)+1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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171 for j=1:length(loops)
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172
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Daniele Nicolodi <nicolodi@science.unitn.it>
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173 loop = loops(j);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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174 ll = loop.level;
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175
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Daniele Nicolodi <nicolodi@science.unitn.it>
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176 % go through each value for this loop
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Daniele Nicolodi <nicolodi@science.unitn.it>
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177 vals = loop.values;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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178 if ~isempty(str2num(vals))
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Daniele Nicolodi <nicolodi@science.unitn.it>
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179 vals = str2num(vals);
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180 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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181 vals = str2cells(vals);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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182 end
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183
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184 for v=1:length(vals)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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185 eval(sprintf('subs(%d).handle = str2double(loop.handle);', k));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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186 eval(sprintf('subs(%d).level = str2num(loop.level);', k));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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187 eval(sprintf('subs(%d).key = loop.key;', k));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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188 eval(sprintf('subs(%d).value = vals(v);', k));
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189
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Daniele Nicolodi <nicolodi@science.unitn.it>
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190 k = k + 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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191 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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192 end
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193
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194 %--------------------------------------------------------------------------
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195 % Run a loop around a set of commands
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196 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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197 function runLoop(cmds, handle, key, val)
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198
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199 % evaluate each command
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Daniele Nicolodi <nicolodi@science.unitn.it>
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200 % - here we can set the waitbar caption to display the current
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Daniele Nicolodi <nicolodi@science.unitn.it>
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201 % - parameter name and value
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Daniele Nicolodi <nicolodi@science.unitn.it>
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202 h = waitbar(0,'Executing pipeline...');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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203 nc = length(cmds);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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204 for j=1:nc
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Daniele Nicolodi <nicolodi@science.unitn.it>
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205 cmd = cmds(j);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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206 hval = (1-handle/cmd.handle);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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207 % if hval < 1e-10
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Daniele Nicolodi <nicolodi@science.unitn.it>
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208 if handle == cmd.handle
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Daniele Nicolodi <nicolodi@science.unitn.it>
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209 cmd
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Daniele Nicolodi <nicolodi@science.unitn.it>
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210 disp('^^^ performing parameter substitution.');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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211 pl = cmd.plist;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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212 pl = set(pl, key, val);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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213 params = string(pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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214 newcmd = sltpda_buildCmd(cmd.ins, cmd.outs, params, cmd.fcn);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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215 cmd.cmd = newcmd;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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216 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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217 disp(['== executing: ' cmd.cmd]);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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218 eval(cmd.cmd);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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219 waitbar(j/nc,h)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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220 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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221 delete(h);