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annotate m-toolbox/classes/+utils/@jmysql/getsinfo.m @ 0:f0afece42f48

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Import.
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Wed, 23 Nov 2011 19:22:13 +0100
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children 91f21a0aab35
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1 % GETSINFO This function returns an sinfo object containing many useful information about an object retrieved from the repository
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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3 %
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4 % usage: sinfo = getsinfo(id, conn)
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5 %
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6 % inputs: id = obj_id from objmeta table
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7 % conn = utils.mysql.connect(server, dbname);
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8 %
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9 % outputs: sinfo cell array object containing info about object having the
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10 % given obj_id on the repository.
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11 % sinfo contains the following fields:
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12 % - name
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13 % - experiment_title
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14 % - experiment_desc
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15 % - analysis_desc
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16 % - quantity
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17 % - additional_authors
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18 % - additional_comments
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19 % - keywords and reference_ids
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20 %
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21 % A Monsky 05-02-2009
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22 %
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23 % version: $Id: getsinfo.m,v 1.2 2011/03/29 13:40:16 hewitson Exp $
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24 %
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25 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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26 function [varargout] = getsinfo(varargin)
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27
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28 import utils.const.*
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29 utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);
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30
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31 % Collect input variable names
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32 in_names = cell(size(varargin));
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33 for ii = 1:nargin,in_names{ii} = inputname(ii);end
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34
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35 % Collect all ids and plists and connections
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36 pl = utils.helper.collect_objects(varargin(:), 'plist');
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37 id = utils.helper.collect_objects(varargin(:), 'double');
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38 conn = utils.helper.collect_objects(varargin(:), 'mpipeline.repository.RepositoryConnection');
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39
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40 if isempty(conn)
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41 error('### This method needs a java connection (mpipeline.repository.RepositoryConnection).');
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42 end
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43
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44 if isempty(id)
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45 error('### This method needs at least one object id.');
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46 end
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47
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48 if nargout == 0
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49 error('### lscov can not be used as a modifier method. Please give at least one output');
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50 end
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51
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52 % combine plists
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53 pl = combine(pl, plist());
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54
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55 % Algorithm
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56 % Get complete experiment information for each input id
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57 sinfo = [];
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58 for ii=1:length(id)
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59 qall = ['select name,experiment_title,experiment_desc,analysis_desc,quantity, '...
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60 'additional_authors,additional_comments,keywords,reference_ids FROM objmeta ' ...
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61 sprintf('where objmeta.obj_id=%d',id(ii))];
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62
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63 infoall = utils.jmysql.dbquery(conn, qall);
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64 s.conn = conn;
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65 s.name = infoall{1};
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66 s.experiment_title = infoall{2};
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67 s.experiment_description = infoall{3};
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68 s.analysis_description = infoall{4};
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69 s.quantity = infoall{5};
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70 s.additional_authors = infoall{6};
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71 s.additional_comments = infoall{7};
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72 s.keywords = infoall{8};
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73 s.reference_ids = infoall{9};
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74 sinfo = [sinfo s];
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75 end
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76
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77 % Set output
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78 varargout{1} = sinfo;
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79 end