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annotate m-toolbox/classes/+utils/@math/loglikelihood_td.m @ 52:daf4eab1a51e database-connection-manager tip

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Fix. Default password should be [] not an empty string
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Wed, 07 Dec 2011 17:29:47 +0100
parents f0afece42f48
children
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rev   line source
0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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1 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 % Compute log-likelihood in time domain assuming a multivariate gaussian
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % distribution
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 % INPUT
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 % - res, a vector of AOs containing residuals
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % - noise, a vector of AOs containing noise
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 % - cutbefore, followed by the data samples to cut at the starting of the
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % data series
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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12 % - cutafter, followed by the data samples to cut at the ending of the
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 % data series
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 % L Ferraioli 10-10-2010
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Daniele Nicolodi <nicolodi@science.unitn.it>
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16 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 % $Id: loglikelihood_td.m,v 1.1 2011/03/15 16:19:20 miquel Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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18 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 function loglk = loglikelihood_td(res,noise,varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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21
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 cutbefore = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 cutafter = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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24 if ~isempty(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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25 for j=1:length(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26 if strcmp(varargin{j},'cutbefore')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27 cutbefore = varargin{j+1};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 if strcmp(varargin{j},'cutafter')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30 cutafter = varargin{j+1};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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34
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 nres = numel(res);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36 loglk = 0;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 for ii=1:nres
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40 yres = res(ii).y;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41 ynoise = noise(ii).y;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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42 % willing to work with rows
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43 if size(yres,2)<size(yres,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 yres = yres.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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45 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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46 if size(ynoise,2)<size(ynoise,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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47 ynoise = ynoise.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49 if ~isempty(cutbefore)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 yres(1:cutbefore) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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51 ynoise(1:cutbefore) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 if ~isempty(cutafter)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 yres(end-cutafter:end) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 ynoise(end-cutafter:end) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 % R = utils.math.Rcovmat(yres);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 % xx = R\yres.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 % Ndim = numel(yres);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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62 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63 % loglk = loglk + abs(xx'*xx)./Ndim;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 cmat = utils.math.xCovmat(ynoise);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67 [L,p] = chol(cmat,'lower');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 if p==0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 xx = L\yres.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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70 Ndim = numel(yres);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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71 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 q = p-1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 yyres = yres(1:q);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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74
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 xx = L\yyres.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 Ndim = numel(yyres);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 loglk = loglk + abs(xx'*xx)./Ndim;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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85 %%% get cros terms
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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86 if nres>1
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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87
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 for ii=1:nres-1
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Daniele Nicolodi <nicolodi@science.unitn.it>
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89 for jj=ii+1:nres
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 yres1 = res(ii).y;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92 yres2 = res(jj).y;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 ynoise1 = noise(ii).y;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 ynoise2 = noise(jj).y;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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95 % willing to work with rows
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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96 if size(yres1,2)<size(yres1,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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97 yres1 = yres1.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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98 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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99 if size(yres2,2)<size(yres2,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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100 yres2 = yres2.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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101 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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102 if size(ynoise1,2)<size(ynoise1,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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103 ynoise1 = ynoise1.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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104 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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105 if size(ynoise2,2)<size(ynoise2,1)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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106 ynoise2 = ynoise2.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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107 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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108 if ~isempty(cutbefore)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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109 yres1(1:cutbefore) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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110 yres2(1:cutbefore) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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111 ynoise1(1:cutbefore) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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112 ynoise2(1:cutbefore) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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113 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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114 if ~isempty(cutafter)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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115 yres1(end-cutafter:end) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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116 yres2(end-cutafter:end) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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117 ynoise1(end-cutafter:end) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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118 ynoise2(end-cutafter:end) = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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119 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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120
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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121 % Rx = utils.math.Rcovmat(yres1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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122 % Ry = utils.math.Rcovmat(yres2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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123 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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124 % xx = Rx\yres1.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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125 % yy = Ry\yres2.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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126 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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127 % Ndim = numel(yres1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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128 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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129 % loglk = loglk + 2.*abs(xx'*yy)./Ndim;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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130
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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131 cmat = utils.math.xCovmat(ynoise1,ynoise2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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132
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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133 [L,p] = chol(cmat,'lower');
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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134 if p==0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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135 xx = L\yres1.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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136 Ndim = numel(yres1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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137 yy = L\yres2.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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138 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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139 q = p-1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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140 yyres1 = yres1(1:q);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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141 yyres2 = yres2(1:q);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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142
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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143 xx = L\yyres1.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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144 Ndim = numel(yyres1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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145 yy = L\yyres2.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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146 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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147
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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148 loglk = loglk + 2.*abs(xx'*yy)./Ndim;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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149
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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150
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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151 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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152 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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153
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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154 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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155
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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156
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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157 end