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annotate m-toolbox/classes/@history/hist2m.m @ 52:daf4eab1a51e database-connection-manager tip

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Fix. Default password should be [] not an empty string
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Wed, 07 Dec 2011 17:29:47 +0100
parents f0afece42f48
children
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 % HIST2M writes a new m-file that reproduces the analysis described in the history object.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % DESCRIPTION: HIST2M writes a new m-file that reproduces the analysis described
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 % in the history object.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 % CALL: cmds = hist2m(h);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % INPUT: h - history object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % OUTPUT: cmds - cell array with the commands to reproduce the data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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12 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 % VERSION: $Id: hist2m.m,v 1.49 2011/03/29 13:40:16 hewitson Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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16
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 function cmds = hist2m(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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18
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 import utils.const.*
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);
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21
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 % Get history objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 hists = varargin{1};
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24
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25 if nargin >= 2
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26 pl = combine(varargin{2}, getDefaultPlist());
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28 pl = getDefaultPlist();
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 % Created contains the epochtime in millisecounds and CREATED2INT define
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32 % the number of the last digits
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33 CREATED2INT = 1e7;
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34
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 % get a node list
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36 utils.helper.msg(msg.PROC1, 'extracting node list from history');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37 [n,a, nodes] = getNodes(hists, pl.find('stop_option'));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 utils.helper.msg(msg.PROC1, 'converting history nodes to commands');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39 % loop over nodes and convert to commands
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40 i = 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41 cmds = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42 while i <= length(nodes)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43 v = nodes(i).n;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 idx = find([nodes(:).pn] == i);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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45 pl = nodes(i).pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46 aoName = mod(nodes(i).h.proctime,CREATED2INT);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47 hi = [nodes(idx).h];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 iNames = zeros(size(hi));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49 for j=1:length(hi)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 created = hi(j).proctime; %get(hi(j), 'created');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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51 iNames(j) = mod(created,CREATED2INT);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 cmd = writeCmd(char(nodes(i).names), pl, aoName, iNames, nodes(i).h.methodInfo.mclass);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 if ~iscell(cmd), cmd = {cmd}; end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 utils.helper.msg(msg.PROC2, 'wrote command for node %d [%s]', i, char(nodes(i).names));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56 for kk=1:numel(cmd)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 utils.helper.msg(msg.PROC3, 'command: %s', cmd{kk});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59 cmds = {cmds{:} cmd{:}};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 i = i + 1;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 end
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62
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63 % now find commands that are duplicated after the '=' and remap those
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64 utils.helper.msg(msg.PROC1, 'fixing duplicate commands');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 ncmds = length(cmds);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 for j = 1:ncmds
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67 cmdj = cmds{j};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 % now inspect all other commands prior to this one
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 for k = j+1:ncmds
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Daniele Nicolodi <nicolodi@science.unitn.it>
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70 cmdk = cmds{k};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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71 if strcmp(cmdj, cmdk)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 cmds{j} = '';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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74 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 % remove empty commands
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77 cmds = cmds(~strcmp('', cmds));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 utils.helper.msg(msg.PROC1, 'writing output line');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80 % add the final command to produce a_out
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81 alast = deblank(strtok(cmds{1}, '='));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 cmds = [cellstr(sprintf('a_out = %s;', alast)) cmds];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83 end
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84
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85 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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86 % Local Functions %
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87 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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88
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89 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90 % %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 % FUNCTION: writeCmd %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92 % %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 % DESCRIPTION: write a command-line %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 % %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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95 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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96
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Daniele Nicolodi <nicolodi@science.unitn.it>
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97 function cmd = writeCmd(name, pl, aon, ains,methodclass)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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98
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Daniele Nicolodi <nicolodi@science.unitn.it>
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99 ainsStr = '';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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100 % for i=length(ains):-1:1
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101 ni = length(ains);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 for i=1:ni
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Daniele Nicolodi <nicolodi@science.unitn.it>
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103 ainsStr = [ainsStr sprintf('a%d, ', ains(i))];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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105
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Daniele Nicolodi <nicolodi@science.unitn.it>
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106 name = strrep(name, '\_', '_');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108 if ~isempty(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 % convert plist to commands
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110 cmd = plist2cmds(pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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111 % the last command will go as input to the method command
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Daniele Nicolodi <nicolodi@science.unitn.it>
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112 [s,plstr] = strtok(cmd{1});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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113 plstr = strtrim(plstr);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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114 cmd = [ sprintf('a%d = %s(%s%s); %% %s', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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115 aon, name, ainsStr, strtrim(plstr(2:end-1)),methodclass) cmd(2:end)];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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116 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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117 ainsStr = ainsStr(1:end-2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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118 cmd = sprintf('a%d = %s(%s);', aon, name, ainsStr);
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119 end
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120
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Daniele Nicolodi <nicolodi@science.unitn.it>
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121 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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122
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Daniele Nicolodi <nicolodi@science.unitn.it>
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123 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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124 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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125 % FUNCTION: getDefaultPlist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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126 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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127 % DESCRIPTION: Get Default Plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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128 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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129 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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130
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Daniele Nicolodi <nicolodi@science.unitn.it>
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131 function plo = getDefaultPlist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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132 plo = plist('stop_option', 'full');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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133 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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134