Mercurial > hg > ltpda
annotate m-toolbox/classes/@ltpda_uo/retrieve.m @ 52:daf4eab1a51e database-connection-manager tip
Fix. Default password should be [] not an empty string
| author | Daniele Nicolodi <nicolodi@science.unitn.it> |
|---|---|
| date | Wed, 07 Dec 2011 17:29:47 +0100 |
| parents | 0bcdf74587d1 |
| children |
| rev | line source |
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| 0 | 1 % RETRIEVE retrieves a collection of objects from an LTPDA repository. |
| 2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| 3 % | |
| 4 % DESCRIPTION: This static method retrieves a collection of objects from an | |
| 5 % LTPDA repository. | |
| 6 % | |
| 7 % CALL: objs = retrieve(conn, obj_id_1, obj_id_2) | |
| 8 % [o1,o2] = retrieve(conn, obj_id_1, obj_id_2) | |
| 9 % [o1,o2] = retrieve(conn, 'binary', obj_id_1, obj_id_2) | |
| 10 % objs = retrieve(conn, 'Collection', coll_id) | |
| 11 % objs = retrieve(conn, 'binary', 'Collection', coll_id) | |
| 12 % | |
| 13 % INPUTS: | |
| 14 % conn - database connection object | |
| 15 % obj_id_N - an object ID | |
| 16 % coll_id - a collection ID | |
| 17 % 'binary' - to retrieve a binary representation of the object | |
| 18 % (if stored) | |
| 19 % | |
| 20 % OUTPUTS: | |
| 21 % objs - the retrieved object(s) as a cell array.* | |
| 22 % o1,o2,...,oN - returns the first N objects | |
| 23 % | |
| 24 % | |
| 25 % If more than one object is retrieved and only one output is specified | |
| 26 % then the output is a cell array of objects. | |
| 27 % | |
| 28 % If only a single object is requested, it is returned as an object, | |
| 29 % not packed in a cell array. | |
| 30 % | |
| 43 | 31 % VERSION: $Id: retrieve.m,v 1.29 2011/11/30 06:49:01 hewitson Exp $ |
| 0 | 32 % |
| 33 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| 34 | |
| 49 | 35 function varargout = retrieve(conn, varargin) |
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36 |
| 0 | 37 import utils.const.* |
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38 utils.helper.msg(msg.MNAME, 'running %s/%s', mfilename('class'), mfilename); |
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39 |
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40 if numel(varargin) < 2 |
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41 error('### invalid usage'); |
| 0 | 42 end |
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43 |
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44 % connection |
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45 if ~isa(conn, 'java.sql.Connection') |
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46 error('### the first argument should be a java.sql.Connection object'); |
| 0 | 47 end |
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48 |
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49 binary = false; |
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50 if ischar(varargin{1}) && strcmpi(varargin{1}, 'binary') |
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51 % binary |
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52 binary = true; |
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53 varargin = varargin(2:end); |
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54 utils.helper.msg(msg.PROC1, 'binary retrieve'); |
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55 end |
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56 |
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57 if ischar(varargin{1}) && strcmpi(varargin{1}, 'collection') |
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58 % collection |
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59 cid = varargin{2}; |
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60 varargin = varargin(3:end); |
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61 if ~isempty(varargin) |
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62 error('### wrong number of arguments'); |
| 0 | 63 end |
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64 utils.helper.msg(msg.PROC1, 'retrieving collection %d', cid); |
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65 |
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66 % get list of object IDs from the collection ID |
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67 ids = utils.repository.getCollectionIDs(conn, cid); |
| 49 | 68 |
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69 else |
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70 % IDs list |
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71 if isnumeric([varargin{:}]) |
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72 ids = [varargin{:}]; |
| 0 | 73 else |
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74 error('### invalid usage'); |
| 0 | 75 end |
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76 end |
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77 |
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78 utils.helper.msg(msg.PROC1, ['retrieving objects' sprintf(' %d', ids)]); |
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79 |
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80 % output vector |
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81 objs = []; |
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82 |
| 0 | 83 try |
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84 |
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85 % get username and user id |
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86 [username, userid] = utils.repository.getUser(conn); |
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87 |
| 0 | 88 v = ver('LTPDA'); |
| 89 for j=1:length(ids) | |
| 90 | |
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91 rows = utils.mysql.execute(conn, 'SELECT version, obj_type FROM objmeta WHERE obj_id = ?', ids(j)); |
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92 if isempty(rows) |
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93 error('### object %d not found', ids(j)); |
| 0 | 94 end |
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95 objver = rows{1}; |
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96 objtype = rows{2}; |
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97 |
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98 % it is only possible to download the object if the object in the |
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99 % database was submitted with the same or lower LTPDA version as |
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100 % the current version |
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101 if utils.helper.ver2num(v.Version) < utils.helper.ver2num(objver) |
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102 error(['### object %d was submitted with newer LTPDA version (%s) '... |
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103 'than this one (%s). please update'], ids(j), objver, v.Version); |
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104 end |
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105 |
| 0 | 106 if binary |
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107 % binary download |
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108 |
| 0 | 109 % Retrieve the bytes |
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110 rows = utils.mysql.execute(conn, 'SELECT mat FROM bobjs WHERE obj_id = ?', ids(j)); |
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111 if isempty(rows) |
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112 error('### failed to get binary data for object %d', ids(j)); |
| 0 | 113 end |
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114 dd = rows{1}; |
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115 |
| 0 | 116 % Write bytes out to a temp MAT file |
| 117 fname = [tempname '.mat']; | |
| 118 fd = fopen(fname, 'w+'); | |
| 119 fwrite(fd, dd, 'int8'); | |
| 120 fclose(fd); | |
| 121 % Load the MAT data to a structure | |
| 122 obj = load(fname); | |
| 123 % Delete temp file | |
| 124 delete(fname); | |
| 125 % Get the struct out | |
| 126 obj = obj.objs; | |
| 127 | |
| 128 % Check if the retrieved object is a struct | |
| 129 if isstruct(obj) | |
| 130 % Call the constructor with this struct | |
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131 fcn_name = [objtype '.update_struct']; |
| 0 | 132 obj = feval(fcn_name, obj, obj.tbxver); |
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133 obj = feval(objtype, obj); |
| 0 | 134 end |
| 135 % Add tyo object array | |
| 136 objs = [objs {obj}]; | |
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137 |
| 0 | 138 else |
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139 % xml download |
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140 |
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141 % get xml |
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142 rows = utils.mysql.execute(conn, 'SELECT xml FROM objs WHERE id = ?', ids(j)); |
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143 if isempty(rows) |
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144 error('### failed to get data for object %d', ids(j)); |
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145 end |
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146 |
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147 % check xml |
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148 if strcmp(rows{1}(1:13), 'binary submit') |
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149 error('### object %d has binary representation only', ids(j)); |
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150 end |
| 49 | 151 |
| 152 % parse xml | |
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153 stream = java.io.StringBufferInputStream(java.lang.String(rows{1})); |
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154 builder = javax.xml.parsers.DocumentBuilderFactory.newInstance.newDocumentBuilder(); |
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155 xdoc = builder.parse(stream); |
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156 obj = utils.xml.xmlread(xdoc); |
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157 |
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158 % add to output array |
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159 objs = [objs {obj}]; |
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160 |
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161 % make transaction entry |
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162 t = time().format('yyyy-mm-dd HH:MM:SS', 'UTC'); |
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163 utils.mysql.execute(conn, ['INSERT INTO transactions (obj_id, user_id, transdate, direction) ' ... |
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164 'VALUES (?, ?, ?, ?)'], ids(j), userid, t, 'out'); |
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165 utils.helper.msg(msg.PROC1, 'updated transactions table'); |
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166 end |
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167 |
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168 end |
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169 |
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170 catch ex |
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171 utils.helper.msg(msg.PROC1, '### retrieve error'); |
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172 rethrow(ex) |
| 0 | 173 end |
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174 |
| 0 | 175 % Set outputs |
| 176 if nargout == 1 | |
| 177 if length(objs) == 1 | |
| 178 varargout{1} = objs{1}; | |
| 179 else | |
| 180 varargout{1} = objs; | |
| 181 end | |
| 182 else | |
| 183 for k=1:nargout | |
| 184 varargout{k} = objs{k}; | |
| 185 end | |
| 186 end | |
| 187 end |