Mercurial > hg > ltpda

annotate m-toolbox/classes/@ssm/doSubsParameters.m @ 52:daf4eab1a51e database-connection-manager tip

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Fix. Default password should be [] not an empty string
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Wed, 07 Dec 2011 17:29:47 +0100
parents f0afece42f48
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
1 % DOSUBSPARAMETERS enables to substitute symbollic patameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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4 % DESCRIPTION: DOSUBSPARAMETERS enables the substitution of symbolic
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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5 % parameters. This private method does the work of
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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6 % subsParameters and keepParameters.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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7 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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8 % VERSION: $Id: doSubsParameters.m,v 1.10 2011/03/03 18:11:54 hewitson Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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9 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
10 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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11
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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12 function sys = doSubsParameters(sys, subsnames, callerIsMethod)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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13 % checking whether any work need be done at all
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
14 if sys.params.nparams==0 || numel(subsnames)==0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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15 return
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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16 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
17 sysNames = sys.params.getKeys;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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18 wasFound = false(size(subsnames));
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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19 removeParams = false(size(sysNames));
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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20
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
21 % If we have any matrices containing symbolic parameters, then we go
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
22 % ahead and declare all parameters symbolic
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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23 if hasSymbols(sys)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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24 % declaring and evaluating parameters to substitute
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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25 for j=1:numel(sysNames)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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26 pname = sysNames{j};
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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27 indices = strcmpi(subsnames, pname);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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28 cmd1 = [pname '=sym(''', pname, ''');'];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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29
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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30 if sum(indices)>0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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31 % remebering parameter match was found for this entry
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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32 wasFound(indices) = indices(indices);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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33 % remembering parameter to move
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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34 removeParams(j) = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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35
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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36 val = sys.params.params(j).getVal;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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37 if isa(val, 'plist')
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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38 val = find(val, 'value');
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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39 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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40 cmd2 = [pname '=' utils.helper.num2str(val) ';'];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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41 eval(cmd1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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42 eval(cmd2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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43 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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44 eval(cmd1);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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45 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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46 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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47 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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48 % This means we have no symbolic matrix elements, so we can just
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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49 % declare local double variables. This works after you call
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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50 % ssm/optimiseForFitting on the model.
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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51 for j=1:numel(sysNames)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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52 pname = sysNames{j};
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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53 indices = strcmpi(subsnames, pname);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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54
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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55 if sum(indices)>0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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56 % remebering parameter match was found for this entry
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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57 wasFound(indices) = indices(indices);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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58 % remembering parameter to move
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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59 removeParams(j) = true;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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60
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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61 val = sys.params.params(j).getVal;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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62 if isa(val, 'plist')
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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63 val = find(val, 'value');
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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64 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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65 cmd2 = [pname '=' utils.helper.num2str(val) ';'];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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66 eval(cmd2);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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67 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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68 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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69
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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70 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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71
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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72
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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73
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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74 % moving substituted parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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75 if callerIsMethod
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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76 % do nothing, since this implies the object will be thrown away
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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77 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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78 sys.numparams.append(sys.params.params(removeParams));
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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79 sys.params.remove(removeParams);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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80 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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81
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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82 % warning if a parameter was not found in the symbolic parameter
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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83 if sum(~wasFound)>0
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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84 str = ['warning!! parameters : ' subsnames(~wasFound) ' were not found in ' sys.name];
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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85 str = char(str);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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86 display(str);
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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87 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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88
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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89 % evaluation of A, B, C, D matrices
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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90 for i_ss=1:sys.Nss
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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91 % A Matrix
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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92 for j_ss =1:sys.Nss
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
93 if ~isempty(sys.amats{i_ss, j_ss}) && ~isnumeric(sys.amats{i_ss, j_ss})
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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94 sys.amats{i_ss, j_ss} = evalsym(sys.amats{i_ss, j_ss});
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
95 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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96 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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97 % B Matrix
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
98 for j_in =1:sys.Ninputs
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
99 if ~isempty(sys.bmats{i_ss, j_in}) && ~isnumeric(sys.bmats{i_ss, j_in})
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
100 sys.bmats{i_ss, j_in} = evalsym(sys.bmats{i_ss, j_in});
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
101 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
102 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
103 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
104 for i_out=1:sys.Noutputs
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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105 % C Matrix
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
106 for j_ss =1:sys.Nss
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
107 if ~isempty(sys.cmats{i_out, j_ss}) && ~isnumeric(sys.cmats{i_out, j_ss})
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
108 sys.cmats{i_out, j_ss} = evalsym(sys.cmats{i_out, j_ss});
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
109 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
110 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
111 % D Matrix
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
112 for j_in =1:sys.Ninputs
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
113 if ~isempty(sys.dmats{i_out, j_in}) && ~isnumeric(sys.dmats{i_out, j_in})
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
114 sys.dmats{i_out, j_in} = evalsym(sys.dmats{i_out, j_in});
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
115 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
116 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
117 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
118
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
119 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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120
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
121 function out = hasSymbols(sys)
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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122
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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123 out = false;
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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124 if any(cellfun('isclass', sys.amats, 'sym'))
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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125 out = true;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
126 return;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
127 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
128
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
129 if any(cellfun('isclass', sys.bmats, 'sym'))
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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130 out = true;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
131 return;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
132 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
133
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
134 if any(cellfun('isclass', sys.cmats, 'sym'))
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
135 out = true;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
136 return;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
137 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
138
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
139 if any(cellfun('isclass', sys.dmats, 'sym'))
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
140 out = true;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
141 return;
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
142 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
143
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
144 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
145
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
146 function e = evalsym(s)
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
147
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
148 if ischar(s)
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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149 cmat = map2mat(s);
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
150 else
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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151 cmat = map2mat(char(s));
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
152 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
153
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
154 % '^', '*' or '/'
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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155 vmat = strrep(cmat, '^', '.^');
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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156 vmat = strrep(vmat, '*', '.*');
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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157 vmat = strrep(vmat, '/', './');
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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158 vmat(strfind(vmat,'..')) = [];
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
159
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
160 e = evalin('caller', vmat);
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
161
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
162 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
163
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
164 function r = map2mat(r)
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
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165 % MAP2MAT Maple to MATLAB string conversion.
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166 % MAP2MAT(r) converts the Maple string r containing
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167 % matrix, vector, or array to a valid MATLAB string.
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168 %
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169 % Examples: map2mat(matrix([[a,b], [c,d]]) returns
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170 % [a,b;c,d]
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171 % map2mat(array([[a,b], [c,d]]) returns
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172 % [a,b;c,d]
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173 % map2mat(vector([[a,b,c,d]]) returns
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174 % [a,b,c,d]
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175
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176 % Deblank.
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177 r(strfind(r,' ')) = [];
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178 % Remove matrix, vector, or array from the string.
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179 r = strrep(r,'matrix([[','['); r = strrep(r,'array([[','[');
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180 r = strrep(r,'vector([','['); r = strrep(r,'],[',';');
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181 r = strrep(r,']])',']'); r = strrep(r,'])',']');
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182 % Special case of the empty matrix or vector
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183 if strcmp(r,'vector([])') || strcmp(r,'matrix([])') || ...
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184 strcmp(r,'array([])')
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185 r = [];
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186 end
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187 end