--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/testing/utp_1.1/utps/plist/utp_plist_plist.m	Tue Dec 06 18:42:11 2011 +0100
@@ -0,0 +1,835 @@
+% UTP_PLIST_PLIST a set of UTPs for the plist/plist method
+%
+% M Hewitson 06-08-08
+%
+% $Id: utp_plist_plist.m,v 1.14 2011/03/01 11:31:53 ingo Exp $
+%
+
+% <MethodDescription>
+%
+% The plist method of the plist class constructs PLIST objects.
+%
+% </MethodDescription>
+
+function results = utp_plist_plist(varargin)
+
+  % Check the inputs
+  if nargin == 0
+
+    % Some keywords
+    class   = 'plist';
+    mthd    = 'plist';
+
+    results = [];
+    disp('******************************************************');
+    disp(['****  Running UTPs for ' class '/' mthd]);
+    disp('******************************************************');
+
+    % Test PLIST objects
+    [pl1, pl2, pl3, pl4, plv, plm] = get_test_objects_plist;
+
+    % Exception list for the UTPs:
+    [ple1,ple2,ple3,ple4,ple5,ple6] = get_test_ples();
+
+    % Run the tests
+    results = [results utp_01];    % getInfo call
+    results = [results utp_02];    % Vector input
+    results = [results utp_03];    % Matrix input
+    results = [results utp_04];    % List input
+    results = [results utp_05];    % Test with mixed input
+    results = [results utp_06];    % Test history is working with MAT file constructor
+    results = [results utp_07];    % Test history is working with XML file constructor
+    results = [results utp_08];    % Test struct constructor
+    results = [results utp_09];    % Test param-object constructor
+    results = [results utp_10];    % Test plist(filename) constructor
+    results = [results utp_11];    % Test plist(hostname) constructor
+    results = [results utp_12];    % Test history is working with conn+Id constructor
+    results = [results utp_13];    % Test history is working with a + b + fs constructor
+
+    disp('Done.');
+    disp('******************************************************');
+
+  elseif nargin == 1 % Check for UTP functions
+    if strcmp(varargin{1}, 'isutp')
+      results = 1;
+    elseif strcmpi(varargin{1}, 'needs repository')
+      results = 2;
+    else
+      results = 0;
+    end
+  else
+    error('### Incorrect inputs')
+  end
+
+  %% UTP_01
+
+  % <TestDescription>
+  %
+  % Tests that the getInfo call works for this method.
+  %
+  % </TestDescription>
+  function result = utp_01
+
+
+    % <SyntaxDescription>
+    %
+    % Test that the getInfo call works for no sets, all sets, and each set
+    % individually.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      % Call for no sets
+      io(1) = eval([class '.getInfo(''' mthd ''', ''None'')']);
+      % Call for all sets
+      io(2) = eval([class '.getInfo(''' mthd ''')']);
+      % Call for each set
+      for kk=1:numel(io(2).sets)
+        io(kk+2) = eval([class '.getInfo(''' mthd ''', ''' io(2).sets{kk} ''')']);
+      end
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that getInfo call returned an minfo object in all cases.
+    % 2) Check that all plists have the correct parameters.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      % check we have minfo objects
+      if isa(io, 'minfo')
+        %%% SET 'None'
+        if ~isempty(io(1).sets), atest = false; end
+        if ~isempty(io(1).plists), atest = false; end
+        %%% Check all Sets
+        if ~any(strcmpi(io(2).sets, 'Default')), atest = false; end
+        if ~any(strcmpi(io(2).sets, 'From MAT File')), atest = false; end
+        if ~any(strcmpi(io(2).sets, 'From XML File')), atest = false; end
+        if ~any(strcmpi(io(2).sets, 'From Repository')), atest = false; end
+        if numel(io(2).plists) ~= numel(io(2).sets), atest = false; end
+        %%%%%%%%%%   SET 'Default'
+        if io(3).plists.nparams ~= 0, atest = false; end
+        % Check key
+        % Check default value
+        % Check options
+        %%%%%%%%%%   SET 'From MAT File'
+        pn = 4;
+        if io(pn).plists.nparams ~= 1, atest = false; end
+        % Check key
+        if ~io(pn).plists.isparam('filename'), atest = false; end
+        % Check default value
+        if ~isEmptyChar(io(pn).plists.find('filename')), atest = false; end
+        % Check options
+        if ~isequal(io(pn).plists.getOptionsForParam('filename'), {''}), atest = false; end
+        %%%%%%%%%%   SET 'From XML File'
+        pn = 5;
+        if io(pn).plists.nparams ~= 1, atest = false; end
+        % Check key
+        if ~io(pn).plists.isparam('filename'), atest = false; end
+        % Check default value
+        if ~isEmptyChar(io(pn).plists.find('filename')), atest = false; end
+        % Check options
+        if ~isequal(io(pn).plists.getOptionsForParam('filename'), {''}), atest = false; end
+        %%%%%%%%%%   SET 'From Repository'
+        pn = 6;
+        if io(pn).plists.nparams ~= 7, atest = false; end
+        % Check key
+        if ~io(pn).plists.isparam('hostname'), atest = false; end
+        if ~io(pn).plists.isparam('id'), atest = false; end
+        if ~io(pn).plists.isparam('cid'), atest = false; end
+        if ~io(pn).plists.isparam('database'), atest = false; end
+        if ~io(pn).plists.isparam('binary'), atest = false; end
+        if ~io(pn).plists.isparam('username'), atest = false; end
+        if ~io(pn).plists.isparam('password'), atest = false; end
+        % Check default value
+        if ~isEmptyDouble(io(pn).plists.find('id')), atest = false; end
+        if ~isEmptyDouble(io(pn).plists.find('cid')), atest = false; end
+        if ~isequal(io(pn).plists.find('binary'), 'yes'), atest = false; end
+        % Check options
+        if ~isequal(io(pn).plists.getOptionsForParam('id'), {[]}), atest = false; end
+        if ~isequal(io(pn).plists.getOptionsForParam('cid'), {[]}), atest = false; end
+        if ~isequal(io(pn).plists.getOptionsForParam('binary'), {'yes', 'no'}), atest = false; end
+      end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_01
+
+  %% UTP_02
+
+  % <TestDescription>
+  %
+  % Tests that the plist method works with a vector of PLIST objects as input.
+  %
+  % </TestDescription>
+  function result = utp_02
+
+    % <SyntaxDescription>
+    %
+    % Test that the plist method works with a vector of PLIST objects as input.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      out  = plist(plv);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the shape of the output PLISTs is the same as the input shape.
+    % 2) Check that each output PLIST is a copy of the input PLIST.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      % Check we have the correct shape
+      if size(out) ~= size(plv), atest = false; end
+
+      % Check that the output is a copy.
+      for ii = 1:numel(out)
+        % Check that the output is the same
+        if ~eq(plv(ii), out(ii), ple1), atest = false; end
+        % Change the output to make sure that it is a 'real' copy
+        out(ii).setDescription('my desc');
+        if eq(plv(ii), out(ii), ple1), atest = false; end
+      end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_02
+
+  %% UTP_03
+
+  % <TestDescription>
+  %
+  % Tests that the plist method works with a matrix of PLIST objects as input.
+  %
+  % </TestDescription>
+  function result = utp_03
+
+    % <SyntaxDescription>
+    %
+    % Test that the plist method works with a matrix of PLIST objects as input.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      out  = plist(plm);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the shape of the output PLISTs is the same as the input shape.
+    % 2) Check that each output PLIST is a copy of the input PLIST.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      % Check we have the correct number of outputs
+      if size(out) ~= size(plm), atest = false; end
+
+      % Check that the output is a copy.
+      for ii = 1:numel(out)
+        % Check that the output is the same
+        if ~eq(plm(ii), out(ii), ple1), atest = false; end
+        % Change the output to make sure that it is a 'real' copy
+        out(ii).setDescription('my desc');
+        if eq(plm(ii), out(ii), ple1), atest = false; end
+      end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_03
+
+  %% UTP_04
+
+  % <TestDescription>
+  %
+  % Tests that the plist method works with a list of PLIST objects as input.
+  %
+  % </TestDescription>
+  function result = utp_04
+
+    % <SyntaxDescription>
+    %
+    % Test that the plist method works with a list of PLIST objects as input.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      out = plist(pl1, pl2, pl3, pl4);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the number of elements in 'out' is the same of the
+    %    number in the input.
+    % 2) Check that each output PLIST is a copy of the input PLIST.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    plin = [pl1, pl2, pl3, pl4];
+    if stest
+      % <AlgoCode>
+      % Check we have the correct number of outputs
+      if numel(out) ~= numel(plin), atest = false; end
+
+      % Check that the output is a copy.
+      for ii = 1:numel(out)
+        % Check that the output is the same
+        if ~eq(plin(ii), out(ii), ple1), atest = false; end
+        % Change the output to make sure that it is a 'real' copy
+        out(ii).setDescription('my desc');
+        if eq(plin(ii), out(ii), ple1), atest = false; end
+      end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_04
+
+  %% UTP_05
+
+  % <TestDescription>
+  %
+  % Tests that the plist method works with a mix of different shaped PLISTs as
+  % input.
+  %
+  % </TestDescription>
+  function result = utp_05
+
+    % <SyntaxDescription>
+    %
+    % Test that the plist method works with a mix of different shaped PLISTs as
+    % input.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      out   = plist(pl1,plv,pl2,plm,pl3);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the number of elements in 'out' is the same of the
+    %    number in the input.
+    % 2) Check that each output PLIST is a copy of the input PLIST.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    plin = [pl1, reshape(plv, 1, []), pl2, reshape(plm, 1, []), pl3];
+    if stest
+      % <AlgoCode>
+      % Check we have the correct number of outputs
+      if numel(out) ~= 3+numel(plv)+numel(plm), atest = false; end
+
+      % Check that the output is a copy.
+      for ii = 1:numel(out)
+        % Check that the output is the same
+        if ~eq(plin(ii), out(ii), ple1), atest = false; end
+        % Change the output to make sure that it is a 'real' copy
+        out(ii).setDescription('my desc');
+        if eq(plin(ii), out(ii), ple1), atest = false; end
+      end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_05
+
+  %% UTP_06
+
+  % <TestDescription>
+  %
+  % Tests the MAT-file constructor.
+  %
+  % </TestDescription>
+  function result = utp_06
+
+    % <SyntaxDescription>
+    %
+  % Tests the MAT-file constructor.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      filename = 'pl.mat';
+      save(pl3, filename);
+      out = plist(filename);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the saved object is the same as the loaded object.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      if ~eq(out, pl3), atest = false; end
+      % </AlgoCode>
+      delete(filename);
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_06
+
+
+  %% UTP_07
+
+  % <TestDescription>
+  %
+  % Tests the XML-file constructor.
+  %
+  % </TestDescription>
+  function result = utp_07
+
+    % <SyntaxDescription>
+    %
+  % Tests the XML-file constructor.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      filename = 'pl.xml';
+      save(pl3, filename);
+      out = plist(filename);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the saved object is the same as the loaded object.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      if ~eq(out, pl3), atest = false; end
+      % </AlgoCode>
+      delete(filename);
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_07
+
+
+  %% UTP_08
+
+  % <TestDescription>
+  %
+  % Tests that the plist method for a struct as an input.
+  %
+  % </TestDescription>
+  function result = utp_08
+
+    % <SyntaxDescription>
+    %
+    % Tests that the plist method for a struct as an input.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+
+      spl = utils.prog.rstruct(pl2);
+      
+      out1 = plist(struct(pl4));
+      out2 = plist(spl);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 2) Check the built object.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      if ~eq(out1, pl4), atest = false; end
+      if ~eq(out2, pl2), atest = false; end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_08
+
+  %% UTP_09
+
+  % <TestDescription>
+  %
+  % Tests the param constructor.
+  %
+  % </TestDescription>
+  function result = utp_09
+
+    % <SyntaxDescription>
+    %
+    % Tests the param constructor.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      p1 = param('a', 1);
+      p2 = param('b', 2);
+      p3 = param('c', 3);
+      out1 = plist(p1);
+      out2 = plist([p1 p2 p3]);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the output contains the input parameter objects
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      % Check that the output is a PLIST object
+      if ~isa(out1,'plist'), atest = false; end
+      if ~isa(out2,'plist'), atest = false; end
+      % Check the number of parameter objects in the PLIST
+      if out1.nparams ~= 1, atest = false; end
+      if out2.nparams ~= 3, atest = false; end
+      % Check that the parameter objects exist in the plist object
+      if ~isequal(out1.find('a'), 1), atest = false; end
+      if ~isequal(out2.find('a'), 1), atest = false; end
+      if ~isequal(out2.find('b'), 2), atest = false; end
+      if ~isequal(out2.find('c'), 3), atest = false; end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_09
+
+  %% UTP_10
+
+  % <TestDescription>
+  %
+  % Tests the plist(filename) constructor.
+  %
+  % </TestDescription>
+  function result = utp_10
+
+    % <SyntaxDescription>
+    %
+    % Tests the plist(filename) constructor.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      filename1 = 'pl.xml';
+      filename2 = 'pl.mat';
+
+      save(pl1, filename1);
+      save(pl2, filename2);
+
+      out1 = plist(plist('filename', filename1));
+      out2 = plist(plist('filename', filename2));
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check that the loaded object is the same as the saved object
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      if ~eq(out1, pl1), atest = false; end
+      if ~eq(out2, pl2), atest = false; end
+      % </AlgoCode>
+      % delete test file
+      delete(filename1)
+      delete(filename2)
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_10
+
+  %% UTP_11
+
+  % <TestDescription>
+  %
+  % Tests the plist(conn) constructor.
+  %
+  % </TestDescription>
+  function result = utp_11
+
+    % <SyntaxDescription>
+    %
+    % Tests the plist(conn) constructor.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      conn = utpGetConnection();
+
+      sinfo.conn                   = conn;
+      sinfo.experiment_title       = 'utp_plist_plist_11: submit plist vector';
+      sinfo.experiment_description = 'utp_plist_plist_11: &description';
+      sinfo.analysis_description   = '<utp_plist_plist_11>';
+      sinfo.quantity               = 'none';
+      sinfo.keywords               = 'none';
+      sinfo.reference_ids          = '';
+      sinfo.additional_comments    = 'none';
+      sinfo.additional_authors     = 'no one';
+
+      plForAutoTest = plist('no dialog', true, 'use selector', false);
+      ids = submit(plv, sinfo, plForAutoTest);
+
+      out  = plist(plist('hostname', utpGetHostname, 'database', utpGetDatabase, 'conn', conn, 'id', ids));
+      % </SyntaxCode>
+      utpCloseConnection(conn);
+      stest = true;
+    catch err
+      disp(err.message)
+      % Close connection
+      utpCloseConnection(conn);
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check the retrieved object against the submitted object.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      if ~eq(out, plv), atest = false; end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_11
+
+  %% UTP_12
+
+  % <TestDescription>
+  %
+  % Tests the conn+Id constructor.
+  %
+  % </TestDescription>
+  function result = utp_12
+
+    % <SyntaxDescription>
+    %
+    % Tests the conn+Id constructor.
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      conn = utpGetConnection();
+
+      sinfo.conn                   = conn;
+      sinfo.experiment_title       = 'utp_plist_plist_12: submit plist';
+      sinfo.experiment_description = 'utp_plist_plist_12: description';
+      sinfo.analysis_description   = 'utp_plist_plist_12';
+      sinfo.quantity               = 'none';
+      sinfo.keywords               = 'none';
+      sinfo.reference_ids          = '';
+      sinfo.additional_comments    = 'none';
+      sinfo.additional_authors     = 'no one';
+
+      plForAutoTest = plist('no dialog', true, 'use selector', false);
+      [ids] = submit(pl3, sinfo, plForAutoTest);
+
+      out = plist(conn, ids);
+      % </SyntaxCode>
+      utpCloseConnection(conn);
+      stest = true;
+    catch err
+      disp(err.message)
+      utpCloseConnection(conn);
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check the retrieved object against the submitted object.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      if ~eq(out, pl3), atest = false; end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_12
+
+  %% UTP_13
+
+  % <TestDescription>
+  %
+  % Tests the key/value constructor
+  %
+  % </TestDescription>
+  function result = utp_13
+
+    % <SyntaxDescription>
+    %
+    % Tests the key/value constructor
+    %
+    % </SyntaxDescription>
+
+    try
+      % <SyntaxCode>
+      out1 = plist('a', 1);
+      out2 = plist('a', 1, 'b', 2);
+      % </SyntaxCode>
+      stest = true;
+    catch err
+      disp(err.message)
+      stest = false;
+    end
+
+    % <AlgoDescription>
+    %
+    % 1) Check the right number of parameter in the PLIST object
+    % 2) Check the parameter in the PLIST object
+    % 3) Check that the key is in capital letter.
+    %
+    % </AlgoDescription>
+
+    atest = true;
+    if stest
+      % <AlgoCode>
+      % Check the right number of parameter in the PLIST object
+      if out1.nparams ~= 1, atest = false; end
+      if out2.nparams ~= 2, atest = false; end
+      % Check the parameter in the PLIST object
+      if ~isequal(out1.find('a'), 1), atest = false; end
+      if ~isequal(out2.find('a'), 1), atest = false; end
+      if ~isequal(out2.find('b'), 2), atest = false; end
+      % Check that the key is in capital letter.
+      if ~isequal(out1.params(1).key, 'A'), atest = false; end
+      if ~isequal(out2.params(1).key, 'A'), atest = false; end
+      if ~isequal(out2.params(2).key, 'B'), atest = false; end
+      % </AlgoCode>
+    else
+      atest = false;
+    end
+
+    % Return a result structure
+    result = utp_prepare_result(atest, stest, dbstack, mfilename);
+  end % END UTP_13
+
+end