view m-toolbox/classes/+utils/@jmysql/getsinfo.m @ 7:1e91f84a4be8 database-connection-manager

Make ltpda_up.retrieve work with java.sql.Connection objects
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children 91f21a0aab35
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% GETSINFO This function returns an sinfo object containing many useful information about an object retrieved from the repository
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% usage:   sinfo = getsinfo(id, conn)
%
% inputs:  id    = obj_id from objmeta table
%          conn  = utils.mysql.connect(server, dbname);
%
% outputs: sinfo cell array object containing info about object having the
%          given obj_id on the repository.
%          sinfo contains the following fields:
%          - name
%          - experiment_title
%          - experiment_desc
%          - analysis_desc
%          - quantity
%          - additional_authors
%          - additional_comments
%          - keywords and reference_ids
%
%          A Monsky 05-02-2009
%
% version: $Id: getsinfo.m,v 1.2 2011/03/29 13:40:16 hewitson Exp $
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [varargout] = getsinfo(varargin)
  
  import utils.const.*
  utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);
  
  % Collect input variable names
  in_names = cell(size(varargin));
  for ii = 1:nargin,in_names{ii} = inputname(ii);end
  
  % Collect all ids and plists and connections
  pl = utils.helper.collect_objects(varargin(:), 'plist');
  id = utils.helper.collect_objects(varargin(:), 'double');
  conn  = utils.helper.collect_objects(varargin(:), 'mpipeline.repository.RepositoryConnection');
  
  if isempty(conn)
    error('### This method needs a java connection (mpipeline.repository.RepositoryConnection).');
  end
  
  if isempty(id)
    error('### This method needs at least one object id.');
  end
  
  if nargout == 0
    error('### lscov can not be used as a modifier method. Please give at least one output');
  end
  
  % combine plists
  pl = combine(pl, plist());
  
  % Algorithm
  % Get complete experiment information for each input id
  sinfo = [];
  for ii=1:length(id)
    qall = ['select name,experiment_title,experiment_desc,analysis_desc,quantity, '...
      'additional_authors,additional_comments,keywords,reference_ids FROM objmeta ' ...
      sprintf('where objmeta.obj_id=%d',id(ii))];
    
    infoall = utils.jmysql.dbquery(conn, qall);
    s.conn                    = conn;
    s.name                    = infoall{1};
    s.experiment_title        = infoall{2};
    s.experiment_description  = infoall{3};
    s.analysis_description    = infoall{4};
    s.quantity                = infoall{5};
    s.additional_authors      = infoall{6};
    s.additional_comments     = infoall{7};
    s.keywords                = infoall{8};
    s.reference_ids           = infoall{9};
    sinfo = [sinfo s];
  end
  
  % Set output
  varargout{1} = sinfo;
end