Mercurial > hg > ltpda
view m-toolbox/classes/@ltpda_uo/retrieve.m @ 7:1e91f84a4be8 database-connection-manager
Make ltpda_up.retrieve work with java.sql.Connection objects
author | Daniele Nicolodi <nicolodi@science.unitn.it> |
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date | Mon, 05 Dec 2011 16:20:06 +0100 |
parents | f0afece42f48 |
children | 2f5c9bd7d95d |
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% RETRIEVE retrieves a collection of objects from an LTPDA repository. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % DESCRIPTION: This static method retrieves a collection of objects from an % LTPDA repository. % % CALL: objs = retrieve(conn, obj_id_1, obj_id_2) % [o1,o2] = retrieve(conn, obj_id_1, obj_id_2) % [o1,o2] = retrieve(conn, 'binary', obj_id_1, obj_id_2) % objs = retrieve(conn, 'Collection', coll_id) % objs = retrieve(conn, 'binary', 'Collection', coll_id) % % INPUTS: % conn - database connection object % obj_id_N - an object ID % coll_id - a collection ID % 'binary' - to retrieve a binary representation of the object % (if stored) % % OUTPUTS: % objs - the retrieved object(s) as a cell array.* % o1,o2,...,oN - returns the first N objects % % % If more than one object is retrieved and only one output is specified % then the output is a cell array of objects. % % If only a single object is requested, it is returned as an object, % not packed in a cell array. % % VERSION: $Id: retrieve.m,v 1.28 2011/07/01 14:38:57 ingo Exp $ % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function varargout = retrieve(varargin) % Check if this is a call for parameters if utils.helper.isinfocall(varargin{:}) varargout{1} = getInfo(varargin{3}); return end import utils.const.* utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename); if nargin == 0 help(mfilename); error('### Incorrect inputs'); end objs = []; conn = varargin{1}; if ~isa(conn, 'java.sql.Connection') error('### the first argument should be a java.sql.Connection object'); end try % get username and user id username = utils.mysql.execute(conn, 'SELECT SUBSTRING_INDEX(USER(),''@'',1)'); rows = utils.mysql.execute(conn, 'SELECT id FROM users WHERE username = ?', username{1}); if isempty(rows) error('### could not determine user id'); end userid = rows{1}; binary = false; if nargin >= 3 && ischar(varargin{2}) && strcmpi(varargin{2}, 'binary') %%% retrieve(conn, 'binary', obj_id_1, obj_id_2) %%% retrieve(conn, 'binary', 'Collection', coll_id) binary = true; if nargin == 4 && ischar(varargin{3}) && strcmpi(varargin{3}, 'Collection') && isnumeric(varargin{4}) && numel(varargin{4}) == 1 cid = varargin{4}; % Get a list of object IDs from the collection ID rows = utils.mysql.execute(conn, 'SELECT nobjs, obj_ids FROM collections WHERE id = ?', cid); nobjs = rows{1}; ids = strread(rows{2}, '%d', 'delimiter', ','); if length(ids) ~= nobjs error('### inconsistent collection description'); end elseif nargin >= 3 && isnumeric([varargin{3:end}]) ids = [varargin{3:end}]; else help(mfilename) error('### Incorrect usage'); end elseif nargin == 3 && ischar(varargin{2}) && strcmpi(varargin{2}, 'Collection') && isnumeric(varargin{3}) && numel(varargin{3}) == 1 %%% retrieve(conn, 'Collection', coll_id) cid = varargin{3}; % Get a list of object IDs from the collection ID rows = utils.mysql.execute(conn, 'SELECT nobjs, obj_ids FROM collections WHERE id = ?', cid); nobjs = rows{1}; ids = strread(rows{2}, '%d', 'delimiter', ','); if length(ids) ~= nobjs error('### inconsistent collection description'); end elseif nargin >= 2 && isnumeric([varargin{2:end}]) %%% retrieve(conn, obj_id_1, obj_id_2) ids = [varargin{2:end}]; else help(mfilename) error('### incorrect usage'); end utils.helper.msg(msg.PROC1, ['retrieving objects' sprintf(' %d', ids)]); v = ver('LTPDA'); for j=1:length(ids) rows = utils.mysql.execute(conn, 'SELECT version, obj_type FROM objmeta WHERE obj_id = ?', ids(j)); if isempty(rows) error('### object %d not found', ids(j)); end objver = rows{1}; objtype = rows{2}; % it is only possible to download the object if the object in the % database was submitted with the same or lower LTPDA version as % the current version if utils.helper.ver2num(v.Version) < utils.helper.ver2num(objver) error(['### object %d was submitted with newer LTPDA version (%s) '... 'than this one (%s). please update'], ids(j), objver, v.Version); end if binary % binary download % Retrieve the bytes rows = utils.mysql.execute(conn, 'SELECT mat FROM bobjs WHERE obj_id = ?', ids(j)); if isempty(rows) error('### failed to get binary data for object %d', ids(j)); end dd = rows{1}; % Write bytes out to a temp MAT file fname = [tempname '.mat']; fd = fopen(fname, 'w+'); fwrite(fd, dd, 'int8'); fclose(fd); % Load the MAT data to a structure obj = load(fname); % Delete temp file delete(fname); % Get the struct out obj = obj.objs; % Check if the retrieved object is a struct if isstruct(obj) % Call the constructor with this struct fcn_name = [objtype '.update_struct']; obj = feval(fcn_name, obj, obj.tbxver); obj = feval(objtype, obj); end % Add tyo object array objs = [objs {obj}]; else % xml download % get xml rows = utils.mysql.execute(conn, 'SELECT xml FROM objs WHERE id = ?', ids(j)); if isempty(rows) error('### failed to get data for object %d', ids(j)); end % parse xml stream = java.io.StringBufferInputStream(java.lang.String(rows{1})); builder = javax.xml.parsers.DocumentBuilderFactory.newInstance.newDocumentBuilder(); xdoc = builder.parse(stream); obj = utils.xml.xmlread(xdoc); % add to output array objs = [objs {obj}]; % make transaction entry t = time().format('yyyy-mm-dd HH:MM:SS', 'UTC'); utils.mysql.execute(conn, ['INSERT INTO transactions (obj_id, user_id, transdate, direction) ' ... 'VALUES (?, ?, ?, ?)'], ids(j), userid, t, 'out'); utils.helper.msg(msg.PROC1, 'updated transactions table'); end end catch ex utils.helper.msg(msg.PROC1, '### retrieve error'); rethrow(ex) end % Set outputs if nargout == 1 if length(objs) == 1 varargout{1} = objs{1}; else varargout{1} = objs; end else for k=1:nargout varargout{k} = objs{k}; end end end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Local Functions % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % function ii = getInfo(varargin) if nargin == 1 && strcmpi(varargin{1}, 'None') sets = {}; pl = []; else sets = {'Default'}; pl = getDefaultPlist; end % Build info object ii = minfo(mfilename, 'ltpda_uo', 'ltpda', utils.const.categories.internal, '$Id: retrieve.m,v 1.28 2011/07/01 14:38:57 ingo Exp $', sets, pl); ii.setModifier(false); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % function plout = getDefaultPlist() persistent pl; if exist('pl', 'var')==0 || isempty(pl) pl = buildplist(); end plout = pl; end function plo = buildplist() plo = plist(); p = param({'conn', 'A database object'}, paramValue.EMPTY_DOUBLE); plo.append(p); p = param({'ids', 'IDs which should be collected'}, paramValue.EMPTY_DOUBLE); plo.append(p); end