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Update ltpda_uo.fromRepository
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
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% SMOOTHER smooths a given series of data points using the specified method.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% DESCRIPTION: SMOOTHER smooths a given series of data points using
%              the specified method.
%
% CALL:        b = smoother(a, pl)
%
% <a href="matlab:utils.helper.displayMethodInfo('ao', 'smoother')">Parameters Description</a>
%
% VERSION:     $Id: smoother.m,v 1.30 2011/11/11 15:21:19 luigi Exp $
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

function varargout = smoother(varargin)

  callerIsMethod = utils.helper.callerIsMethod;

  % Check if this is a call for parameters
  if utils.helper.isinfocall(varargin{:})
    varargout{1} = getInfo(varargin{3});
    return
  end

  import utils.const.*
  utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);

  % Collect input variable names
  in_names = cell(size(varargin));
  for ii = 1:nargin,in_names{ii} = inputname(ii);end

  % Collect all AOs and plists
  [as, ao_invars] = utils.helper.collect_objects(varargin(:), 'ao', in_names);
  [pl, pl_invars] = utils.helper.collect_objects(varargin(:), 'plist', in_names);

  % Decide on a deep copy or a modify
  bs = copy(as, nargout);

  % combine plists
  pl = parse(pl, getDefaultPlist());

  % Get parameters from plist
  bw      = find(pl, 'width');
  hc      = find(pl, 'hc');
  method  = find(pl, 'method');

  % check the method
  if  ~strcmp(method, 'median') && ...
      ~strcmp(method, 'mean') && ...
      ~strcmp(method, 'min') && ...
      ~strcmp(method, 'max') && ...
      ~strcmp(method, 'mode')
    help(mfilename)
    error('### Unknown smoothing method');
  end

  % Loop over input AOs
  for j=1:numel(bs)
    utils.helper.msg(msg.PROC1, 'smoothing %s', bs(j).name);
    switch lower(method)
      case {'median', 'mean', 'min', 'max'}
        bs(j).data.setY(ltpda_smoother(bs(j).data.getY, bw, hc, method));
      otherwise
        bs(j).data.setY(smooth(bs(j).data.getY, bw, hc, method));
    end
    % set name
    bs(j).name = sprintf('smoother(%s)', ao_invars{j});
    % Add history
    if ~callerIsMethod
      bs(j).addHistory(getInfo('None'), pl, ao_invars(j), bs(j).hist);
    end
  end

  % clear errors
  bs.clearErrors;

  % Set output
  if nargout == numel(bs)
    % List of outputs
    for ii = 1:numel(bs)
      varargout{ii} = bs(ii);
    end
  else
    % Single output
    varargout{1} = bs;
  end
end

%--------------------------------------------------------------------------
% Get Info Object
%--------------------------------------------------------------------------
function ii = getInfo(varargin)
  if nargin == 1 && strcmpi(varargin{1}, 'None')
    sets = {};
    pl   = [];
  else
    sets = {'Default'};
    pl   = getDefaultPlist;
  end
  % Build info object
  ii = minfo(mfilename, 'ao', 'ltpda', utils.const.categories.sigproc, '$Id: smoother.m,v 1.30 2011/11/11 15:21:19 luigi Exp $', sets, pl);
end


%--------------------------------------------------------------------------
% smooth data
function ys = smooth(y, bw, hc, method)
  N = length(y);
  ys = zeros(size(y));

  % function to smooth with
  mfcn = eval(['@(x) ' method '(x)' ]);

  for kk=1:N
    if mod(kk, 1000)==0
      utils.helper.msg(utils.const.msg.PROC1, 'smoothed %06d samples', kk);
    end
    % Determine the interval we are looking in
    interval = kk-bw/2:kk+bw/2;
    interval(interval<=0)=1;
    interval(interval>N)=N;
    % calculate method(values) of interval
    % after throwing away outliers
    trial = sort(y(interval));
    b = round(hc*length(trial));
    ys(kk)  = mfcn(trial(1:b));
  end
end

%--------------------------------------------------------------------------
% Get Default Plist
%--------------------------------------------------------------------------
function plout = getDefaultPlist()
  persistent pl;  
  if exist('pl', 'var')==0 || isempty(pl)
    pl = buildplist();
  end
  plout = pl;  
end

function pl = buildplist()
  pl = plist();
  
  % width
  p = param({'width', 'The width of the smoothing filter.'}, paramValue.DOUBLE_VALUE(20));
  pl.append(p);
  
  % hc
  p = param({'hc', 'A cutoff to throw away outliers (0-1).'}, paramValue.DOUBLE_VALUE(0.8));
  pl.append(p);
  
  % Method
  p = param({'method', 'The smoothing method.'}, {1, {'median', 'mean', 'max', 'mode'}, paramValue.SINGLE});
  pl.append(p);
  
end
% END

% PARAMETERS:  width  - the width of the smoothing filter [default: 20 samples]
%              hc     - a cutoff to throw away outliers (0-1)  [default: 0.8]
%              method - the smoothing method:
%                       'median'  [default]
%                       'mean', 'min', 'max', 'mode'
%