Mercurial > hg > python-allan
view _allan.pyx @ 3:9e56ffd701d4
Fix setup.py to install a real package
author | Daniele Nicolodi <daniele@grinta.net> |
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date | Tue, 24 Mar 2015 18:22:40 +0100 |
parents | 3dcd4cfd8f82 |
children |
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import numpy as np cimport numpy as np cimport cython @cython.boundscheck(False) @cython.wraparound(False) @cython.cdivision(True) def _xmvar(np.ndarray[np.double_t, ndim=1] x, int m): cdef double c cdef double v cdef int n = x.shape[0] cdef unsigned int j cdef unsigned int i c = 0 for j in range(n - 3 * m + 1): v = 0 for i in range(j, j + m): v += (x[i + 2 * m] - 2 * x[i + m] + x[i]) / m c += v * v return c / (2.0 * m*m * (n - 3 * m + 1)) @cython.boundscheck(False) @cython.wraparound(False) @cython.cdivision(True) def _xmvar2(np.ndarray[np.double_t, ndim=1] x, np.ndarray[np.int_t, ndim=1] mm): cdef double z cdef double zi cdef unsigned int n = x.shape[0] cdef unsigned int i cdef unsigned int k cdef unsigned int m cdef np.ndarray[np.double_t, ndim=1] w = np.empty([n + 1, ], np.double) cdef np.ndarray[np.double_t, ndim=1] mvar = np.empty([mm.shape[0], ], np.double) mvar.fill(np.nan) w[0] = 0.0 for i in range(n): w[i + 1] = w[i] + x[i] for k, m in enumerate(mm): if 3 * m > n: continue z = 0 for i in range(n - 3 * m + 1): zi = (w[i + 3 * m] - 3 * w[i + 2 * m] + 3 * w[i + m] - w[i]) / m z += zi * zi mvar[k] = z / (2.0 * m*m * (n - 3 * m + 1)) return mvar @cython.boundscheck(False) @cython.wraparound(False) @cython.cdivision(True) def _xavar(double[:] x, int[:] mm): cdef double z cdef double zi cdef unsigned int n = x.shape[0] cdef unsigned int i cdef unsigned int k cdef unsigned int m cdef int N r = np.empty([mm.shape[0], ], np.double) r.fill(np.nan) cdef double[::1] avar = r for k, m in enumerate(mm): if m < 1: continue N = (n // m) - 2 if N < 1: continue z = 0 for i in range(N): zi = x[i * m] - 2 * x[(i + 1) * m] + x[(i + 2) * m] z += (zi * zi) avar[k] = z / (2.0 * m*m * N) return r