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annotate m-toolbox/classes/@ao/.#psd.m.1.68 @ 36:5eb86f6881ef database-connection-manager

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Remove commented-out code
author Daniele Nicolodi <nicolodi@science.unitn.it>
date Mon, 05 Dec 2011 16:20:06 +0100
parents f0afece42f48
children
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Daniele Nicolodi <nicolodi@science.unitn.it>
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1 % PSD makes power spectral density estimates of the time-series objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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2 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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3 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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4 % DESCRIPTION: PSD makes power spectral density estimates of the
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Daniele Nicolodi <nicolodi@science.unitn.it>
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5 % time-series objects in the input analysis objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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6 % using the Welch Overlap method. PSD is computed
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Daniele Nicolodi <nicolodi@science.unitn.it>
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7 % using a modified version of MATLAB's welch (>> help welch).
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Daniele Nicolodi <nicolodi@science.unitn.it>
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8 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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9 % CALL: bs = psd(a1,a2,a3,...,pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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10 % bs = psd(as,pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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11 % bs = as.psd(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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12 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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13 % INPUTS: aN - input analysis objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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14 % as - input analysis objects array
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Daniele Nicolodi <nicolodi@science.unitn.it>
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15 % pl - input parameter list
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Daniele Nicolodi <nicolodi@science.unitn.it>
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16 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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17 % OUTPUTS: bs - array of analysis objects, one for each input
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Daniele Nicolodi <nicolodi@science.unitn.it>
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18 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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19 % <a href="matlab:utils.helper.displayMethodInfo('ao', 'psd')">Parameters Description</a>
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Daniele Nicolodi <nicolodi@science.unitn.it>
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20 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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21 % VERSION: $Id: psd.m,v 1.68 2011/04/27 05:41:08 mauro Exp $
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Daniele Nicolodi <nicolodi@science.unitn.it>
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22 %
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Daniele Nicolodi <nicolodi@science.unitn.it>
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23 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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Daniele Nicolodi <nicolodi@science.unitn.it>
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24
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Daniele Nicolodi <nicolodi@science.unitn.it>
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25
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Daniele Nicolodi <nicolodi@science.unitn.it>
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26 function varargout = psd(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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27
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Daniele Nicolodi <nicolodi@science.unitn.it>
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28 % Check if this is a call for parameters
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Daniele Nicolodi <nicolodi@science.unitn.it>
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29 if utils.helper.isinfocall(varargin{:})
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Daniele Nicolodi <nicolodi@science.unitn.it>
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30 varargout{1} = getInfo(varargin{3});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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31 return
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Daniele Nicolodi <nicolodi@science.unitn.it>
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32 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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33
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Daniele Nicolodi <nicolodi@science.unitn.it>
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34 import utils.const.*
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Daniele Nicolodi <nicolodi@science.unitn.it>
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35 utils.helper.msg(msg.PROC3, 'running %s/%s', mfilename('class'), mfilename);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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36
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Daniele Nicolodi <nicolodi@science.unitn.it>
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37 % Collect input variable names
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Daniele Nicolodi <nicolodi@science.unitn.it>
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38 in_names = cell(size(varargin));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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39 for ii = 1:nargin,in_names{ii} = inputname(ii);end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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40
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Daniele Nicolodi <nicolodi@science.unitn.it>
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41 % Collect all AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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42 [as, ao_invars] = utils.helper.collect_objects(varargin(:), 'ao', in_names);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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43
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Daniele Nicolodi <nicolodi@science.unitn.it>
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44 % Decide on a deep copy or a modify
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Daniele Nicolodi <nicolodi@science.unitn.it>
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45 bs = copy(as, nargout);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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46
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Daniele Nicolodi <nicolodi@science.unitn.it>
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47 % Apply defaults to plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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48 usepl = applyDefaults(getDefaultPlist, varargin{:});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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49
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Daniele Nicolodi <nicolodi@science.unitn.it>
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50 inhists = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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51
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Daniele Nicolodi <nicolodi@science.unitn.it>
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52 % Loop over input AOs
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Daniele Nicolodi <nicolodi@science.unitn.it>
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53 for jj = 1 : numel(bs)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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54 % gather the input history objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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55 inhists = [inhists bs(jj).hist];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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56
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Daniele Nicolodi <nicolodi@science.unitn.it>
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57 % check input data
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Daniele Nicolodi <nicolodi@science.unitn.it>
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58 if isa(bs(jj).data, 'tsdata')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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59
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Daniele Nicolodi <nicolodi@science.unitn.it>
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60 % Check the time range.
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Daniele Nicolodi <nicolodi@science.unitn.it>
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61 time_range = mfind(usepl, 'split', 'times');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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62 if ~isempty(time_range)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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63 switch class(time_range)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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64 case 'double'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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65 bs(jj) = split(bs(jj), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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66 'times', time_range));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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67 case 'timespan'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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68 bs(jj) = split(bs(jj), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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69 'timespan', time_range));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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70 case 'time'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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71 bs(jj) = split(bs(jj), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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72 'start_time', time_range(1), ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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73 'end_time', time_range(2)));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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74 case 'cell'
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Daniele Nicolodi <nicolodi@science.unitn.it>
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75 bs(jj) = split(bs(jj), plist(...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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76 'start_time', time_range{1}, ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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77 'end_time', time_range{2}));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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78 otherwise
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Daniele Nicolodi <nicolodi@science.unitn.it>
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79 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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80 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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81
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Daniele Nicolodi <nicolodi@science.unitn.it>
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82 % Check the length of the object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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83 if bs(jj).len <= 0
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Daniele Nicolodi <nicolodi@science.unitn.it>
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84 error('### The object is empty! Please revise your settings ...');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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85 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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86
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Daniele Nicolodi <nicolodi@science.unitn.it>
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87 % Utility to deal with nfft, win, olap etc
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Daniele Nicolodi <nicolodi@science.unitn.it>
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88 use_pl = utils.helper.process_spectral_options(usepl, 'lin', len(bs(jj)), bs(jj).fs);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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89
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Daniele Nicolodi <nicolodi@science.unitn.it>
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90 % Compute PSD using pwelch
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Daniele Nicolodi <nicolodi@science.unitn.it>
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91 [pxx, f, info, dev] = welch(bs(jj), 'psd', use_pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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92
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Daniele Nicolodi <nicolodi@science.unitn.it>
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93 % Keep the data shape of the input AO
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Daniele Nicolodi <nicolodi@science.unitn.it>
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94 if size(bs(jj).data.y,1) == 1
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Daniele Nicolodi <nicolodi@science.unitn.it>
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95 pxx = pxx.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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96 f = f.';
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Daniele Nicolodi <nicolodi@science.unitn.it>
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97 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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98 % create new output fsdata
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Daniele Nicolodi <nicolodi@science.unitn.it>
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99 fs = bs(jj).fs;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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100 fsd = fsdata(f, pxx, fs);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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101 fsd.setXunits('Hz');
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Daniele Nicolodi <nicolodi@science.unitn.it>
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102 fsd.setYunits(info.units);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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103 fsd.setEnbw(info.enbw);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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104 fsd.setNavs(info.navs);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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105 fsd.setT0(bs(jj).data.t0);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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106 % update AO
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Daniele Nicolodi <nicolodi@science.unitn.it>
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107 bs(jj).data = fsd;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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108 % add std deviation
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Daniele Nicolodi <nicolodi@science.unitn.it>
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109 bs(jj).data.dy = dev;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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110 % set name: scaling of spectrum
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Daniele Nicolodi <nicolodi@science.unitn.it>
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111 scale = upper(find(use_pl, 'Scale'));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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112 bs(jj).name = sprintf('%s(%s)', lower(scale), ao_invars{jj});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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113 % Add history
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Daniele Nicolodi <nicolodi@science.unitn.it>
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114 bs(jj).addHistory(getInfo('None'), use_pl, ao_invars(jj), inhists(jj));
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Daniele Nicolodi <nicolodi@science.unitn.it>
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115 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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116 warning('### Ignoring input AO number %d (%s); it is not a time-series.', jj, bs(jj).name)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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117 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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118 end % loop over analysis objects
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Daniele Nicolodi <nicolodi@science.unitn.it>
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119
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Daniele Nicolodi <nicolodi@science.unitn.it>
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120 % Set output
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Daniele Nicolodi <nicolodi@science.unitn.it>
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121 varargout = utils.helper.setoutputs(nargout, bs);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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122 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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123
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Daniele Nicolodi <nicolodi@science.unitn.it>
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124 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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125 % Get Info Object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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126 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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127 function ii = getInfo(varargin)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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128 if nargin == 1 && strcmpi(varargin{1}, 'None')
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Daniele Nicolodi <nicolodi@science.unitn.it>
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129 sets = {};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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130 pl = [];
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Daniele Nicolodi <nicolodi@science.unitn.it>
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131 else
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Daniele Nicolodi <nicolodi@science.unitn.it>
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132 sets = {'Default'};
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Daniele Nicolodi <nicolodi@science.unitn.it>
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133 pl = getDefaultPlist();
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Daniele Nicolodi <nicolodi@science.unitn.it>
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134 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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135 % Build info object
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Daniele Nicolodi <nicolodi@science.unitn.it>
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136 ii = minfo(mfilename, 'ao', 'ltpda', utils.const.categories.sigproc, '$Id: psd.m,v 1.68 2011/04/27 05:41:08 mauro Exp $', sets, pl);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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137 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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138
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Daniele Nicolodi <nicolodi@science.unitn.it>
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139 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
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140 % Get Default Plist
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Daniele Nicolodi <nicolodi@science.unitn.it>
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141 %--------------------------------------------------------------------------
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Daniele Nicolodi <nicolodi@science.unitn.it>
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142 function plout = getDefaultPlist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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143 persistent pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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144 if ~exist('pl', 'var') || isempty(pl)
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Daniele Nicolodi <nicolodi@science.unitn.it>
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145 pl = buildplist();
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Daniele Nicolodi <nicolodi@science.unitn.it>
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146 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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147 plout = pl;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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148 end
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Daniele Nicolodi <nicolodi@science.unitn.it>
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149
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Daniele Nicolodi <nicolodi@science.unitn.it>
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150 function pl = buildplist()
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Daniele Nicolodi <nicolodi@science.unitn.it>
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151
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Daniele Nicolodi <nicolodi@science.unitn.it>
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152 % General plist for Welch-based, linearly spaced spectral estimators
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Daniele Nicolodi <nicolodi@science.unitn.it>
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153 pl = plist.WELCH_PLIST;
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Daniele Nicolodi <nicolodi@science.unitn.it>
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154
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Daniele Nicolodi <nicolodi@science.unitn.it>
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155 % Scale
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Daniele Nicolodi <nicolodi@science.unitn.it>
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156 p = param({'Scale',['The scaling of output. Choose from:<ul>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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157 '<li>PSD - Power Spectral Density</li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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158 '<li>ASD - Amplitude (linear) Spectral Density</li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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159 '<li>PS - Power Spectrum</li>', ...
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Daniele Nicolodi <nicolodi@science.unitn.it>
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160 '<li>AS - Amplitude (linear) Spectrum</li></ul>']}, {1, {'PSD', 'ASD', 'PS', 'AS'}, paramValue.SINGLE});
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Daniele Nicolodi <nicolodi@science.unitn.it>
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161 pl.append(p);
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Daniele Nicolodi <nicolodi@science.unitn.it>
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162
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Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
163 end
f0afece42f48 Import.
Daniele Nicolodi <nicolodi@science.unitn.it>
parents:
diff changeset
164