% UTP_AO_COV a set of UTPs for the ao/cov method
%
% M Hewitson 06-08-08
%
% $Id: utp_ao_cov.m,v 1.4 2009/08/07 10:05:39 hewitson Exp $
%

% <MethodDescription>
%
% The cov method of the ao class computes estimate covariance of data
% streams.
%
% </MethodDescription>

function results = utp_ao_cov(varargin)

  % Check the inputs
  if nargin == 0

    % Some keywords
    class   = 'ao';
    mthd    = 'cov';

    results = [];
    disp('******************************************************');
    disp(['****  Running UTPs for ' class '/' mthd]);
    disp('******************************************************');

    plts = plist('fs', '1', 'nsecs', 30, 'tsfcn', 'randn(size(t))');
    plfs = plist('f', '1:30', 'fsfcn', 'randn(size(f))');
    plxy = plist('x', '1:30', 'xyfcn', 'randn(size(x))');
    at1 = ao(plts);
    at1.setYunits('Hz^2');
    at2 = ao(plfs);
    at2.setYunits('Hz^-1');
    at3 = ao(plxy);
    at3.setYunits('km');
    atvec = [at1, at2, at3];
    atmat = [at1, at2, at3; at3, at2, at1];

    % Exception list for the UTPs:
    [ple1,ple2,ple3,ple4,ple5,ple6] = get_test_ples();

    % Run the tests
    results = [results utp_01];    % getInfo call
    results = [results utp_02];    % Vector input
    results = [results utp_03];    % Matrix input
    results = [results utp_04];    % List input
    results = [results utp_05];    % Test with mixed input
    results = [results utp_06];    % Test history is working
    results = [results utp_07];    % Test the modify call works

    results = [results utp_11(mthd, [at1 at1], ple1)];    % Test plotinfo doesn't disappear
    
    
    disp('Done.');
    disp('******************************************************');

  elseif nargin == 1 % Check for UTP functions
    if strcmp(varargin{1}, 'isutp')
      results = 1;
    else
      results = 0;
    end
  else
    error('### Incorrect inputs')
  end

  %% UTP_01

  % <TestDescription>
  %
  % Tests that the getInfo call works for this method.
  %
  % </TestDescription>
  function result = utp_01


    % <SyntaxDescription>
    %
    % Test that the getInfo call works for no sets, all sets, and each set
    % individually.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      % Call for no sets
      io(1) = eval([class '.getInfo(''' mthd ''', ''None'')']);
      % Call for all sets
      io(2) = eval([class '.getInfo(''' mthd ''')']);
      % Call for each set
      for kk=1:numel(io(2).sets)
        io(kk+2) = eval([class '.getInfo(''' mthd ''', ''' io(2).sets{kk} ''')']);
      end
      % </SyntaxCode>
      stest = true;
    catch err
      disp(err.message)
      stest = false;
    end

    % <AlgoDescription>
    %
    % 1) Check that getInfo call returned an minfo object in all cases.
    % 2) Check that all plists have the correct parameters.
    %
    % </AlgoDescription>

    atest = true;
    if stest
      % <AlgoCode>
      % check we have minfo objects
      if isa(io, 'minfo')
        % SET 'None'
        if ~isempty(io(1).sets), atest = false; end
        if ~isempty(io(1).plists), atest = false; end
        % Check all Sets
        if ~any(strcmpi(io(2).sets, 'Default')), atest = false; end
        if numel(io(2).plists) ~= numel(io(2).sets), atest = false; end
        % SET 'Default'
        if io(3).plists.nparams ~= 0, atest = false; end
        % Check key
        % Check default value
        % Check options
      end
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_01

  %% UTP_02

  % <TestDescription>
  %
  % Tests that the cov method works with a vector of AOs as input.
  %
  % </TestDescription>
  function result = utp_02

    % <SyntaxDescription>
    %
    % Test that the cov method works for a vector of AOs as input.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      out = cov(atvec);
      % </SyntaxCode>
      stest = true;
    catch err
      disp(err.message)
      stest = false;
    end

    % <AlgoDescription>
    %
    % 1) Check that the output is exact one Ao with cdata.
    % 2) Check that each output AO contains the correct data.
    %
    % </AlgoDescription>

    atest = true;
    if stest
      % <AlgoCode>
      % Check we have the correct number of outputs
      if numel(out) ~= 1, atest = false; end
      if ~isa(out.data, 'cdata'), atest = false; end
      % Check output data / units
      res = [];
      u   = unit();
      for kk=1:numel(atvec)
        res = [res atvec(kk).y];
        u   = u * atvec(kk).yunits;
      end
      if ~eq(u, out.yunits), atest = false; end
      if ~isequal(cov(res), out.y), atest = false; end
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_02

  %% UTP_03

  % <TestDescription>
  %
  % Tests that the cov method works with a matrix of AOs as input.
  %
  % </TestDescription>
  function result = utp_03

    % <SyntaxDescription>
    %
    % Test that the cov method works for a matrix of AOs as input.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      out = cov(atmat);
      % </SyntaxCode>
      stest = true;
    catch err
      disp(err.message)
      stest = false;
    end

    % <AlgoDescription>
    %
    % 1) Check that the output is exact one Ao with cdata.
    % 2) Check that each output AO contains the correct data.
    %
    % </AlgoDescription>

    atest = true;
    if stest
      % <AlgoCode>
      % Check we have the correct number of outputs
      if numel(out) ~= 1, atest = false; end
      if ~isa(out.data, 'cdata'), atest = false; end
      % Check output data / units
      res = [];
      u   = unit();
      for kk=1:numel(atmat)
        res = [res atmat(kk).y];
        u   = u * atmat(kk).yunits;
      end
      if ~eq(u, out.yunits), atest = false; end
      if ~isequal(cov(res), out.y), atest = false; end
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_03

  %% UTP_04

  % <TestDescription>
  %
  % Tests that the cov method works with a list of AOs as input.
  %
  % </TestDescription>
  function result = utp_04

    % <SyntaxDescription>
    %
    % Tests that the cov method works with a list of AOs as input.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      out = cov(at1, at2, at3);
      % </SyntaxCode>
      stest = true;
    catch err
      disp(err.message)
      stest = false;
    end

    % <AlgoDescription>
    %
    % 1) Check that the output is exact one Ao with cdata.
    % 2) Check that each output AO contains the correct data.
    %
    % </AlgoDescription>

    atest = true;
    aoin  = [at1, at2, at3];
    if stest
      % <AlgoCode>
      % Check we have the correct number of outputs
      if numel(out) ~= 1, atest = false; end
      if ~isa(out.data, 'cdata'), atest = false; end
      % Check output data / units
      res = [];
      u   = unit();
      for kk=1:numel(aoin)
        res = [res aoin(kk).y];
        u   = u * aoin(kk).yunits;
      end
      if ~eq(u, out.yunits), atest = false; end
      if ~isequal(cov(res), out.y), atest = false; end
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_04

  %% UTP_05

  % <TestDescription>
  %
  % Tests that the cov method works with a mix of different shaped AOs as
  % input.
  %
  % </TestDescription>
  function result = utp_05

    % <SyntaxDescription>
    %
    % Tests that the cov method works with a mix of different shaped AOs as
    % input.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      out = cov(at1, atmat, at2, atvec, at3);
      % </SyntaxCode>
      stest = true;
    catch err
      disp(err.message)
      stest = false;
    end

    % <AlgoDescription>
    %
    % 1) Check that the output is exact one Ao with cdata.
    % 2) Check that each output AO contains the correct data.
    %
    % </AlgoDescription>

    atest = true;
    aoin  = [at1, reshape(atmat, 1, []), at2, reshape(atvec, 1, []), at3];
    if stest
      % <AlgoCode>
      % Check we have the correct number of outputs
      if numel(out) ~= 1, atest = false; end
      if ~isa(out.data, 'cdata'), atest = false; end
      % Check output data / units
      res = [];
      u   = unit();
      for kk=1:numel(aoin)
        res = [res aoin(kk).y];
        u   = u * aoin(kk).yunits;
      end
      if ~eq(u, out.yunits), atest = false; end
      if ~isequal(cov(res), out.y), atest = false; end
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_05

  %% UTP_06

  % <TestDescription>
  %
  % Tests that the cov method properly applies history.
  %
  % </TestDescription>
  function result = utp_06

    % <SyntaxDescription>
    %
    % Test that the result of applying the cov method can be processed back.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      out  = cov(at1, at2, at3);
      mout = rebuild(out);
      % </SyntaxCode>
      stest = true;
    catch err
      disp(err.message)
      stest = false;
    end

    % <AlgoDescription>
    %
    % 1) Check that the last entry in the history of 'out' corresponds to
    %    'cov'.
    % 2) Check that the re-built object is the same object as the input.
    %
    % </AlgoDescription>

    atest = true;
    if stest
      % <AlgoCode>
      % Check the last step in the history of 'out'
      if ~strcmp(out.hist.methodInfo.mname, 'cov'), atest = false; end
      % The rebuilt object must be the same as 'out'
      if ~eq(mout, out, ple2), atest = false; end
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_06

  %% UTP_07

  % <TestDescription>
  %
  % The cov method can not modify the input AO.
  %
  % </TestDescription>
  function result = utp_07

    % <SyntaxDescription>
    %
    % The cov method can not modify the input AO.
    %
    % </SyntaxDescription>

    try
      % <SyntaxCode>
      % copy at1 to work with
      amodi = ao(at1);
      aeq   = ao(at1);
      out = aeq.cov();
      amodi.abs();
      stest = false;
      % </SyntaxCode>
    catch err
      stest = true;
    end

    % <AlgoDescription>
    %
    % 1) Nothing to test.
    %
    % </AlgoDescription>

    atest = true;
    if stest
      % <AlgoCode>
      % </AlgoCode>
    else
      atest = false;
    end

    % Return a result structure
    result = utp_prepare_result(atest, stest, dbstack, mfilename);
  end % END UTP_07

end